Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2800 ATGTGGGGTTGCGTTCCCGTGTTGCTGGCCTTAGCCGCCGTGGTGGCGGTGGTGCCGGCGACGGTGGTGTTGCCGGGGAGGAGCTTCCTTCCTCTCGAACGTGCCATTCCTCTGAACCGCCGCGTCGAGCTGGAAGAACTGAGAGCTCGCGACGGAGCACGCCGCCGTCGAATCTTGCAAGGCGCGGTTGACGGCGTCGTCGACTTCTCAGTCCAAGGAACCTCCGATCCTTACTTCGTTGGGTTGTATTTCACTAAAGTGAAGATGGGTTCTCCTCCTAGGGAATTTAACGTCCAGATTGATACTGGAAGTGACATCTTGTGGGTTACTTGCAATAGTTGTAGTAATTGTCCAAAATCTAGTGGGCTGGGGATTCAGCTCAATTTCTTTGACGCCTCCAGCTCATCCACTGCTGAACTTGTTTCGTGCTCGGACCAGATATGCGGTTATGCGGTTCAAACTGCGACGAGTGAATGCTCTTCTCAGGTTAATCAGTGCAGCTACACCTTTCACTACGGAGACGGAAGTGGGACATCTGGTTATTATGTTTCTGATGTTATGTATTTTGACACAGTCGTGGGACAGTCTTTGCTTTCTAACTCGTCATCTACTGTAGTTTTTGGGTGTAGCACCTTTCAGTCTGGAGAATTGACTAAGACAGAAAAAGCAGTTGATGGAATTTTTGGATTTGGCCCTGGTGCTCTGTCTGTTGTATCACAACTGTCATCGCGAAGCATGACACCCAAAGTTTTCTCTCATTGCTTAAAAGGAGACGGCAATGGAGGAGGCATACTAGTTCTTGGTCAGATTTTGGAGCCAAGTATTGTTTATAGTCCACTTGTTCCATCACAGCCCCATTACAACTTAAATCTTGAGGGCATTGCTGTCAATGGACAACTCCTCTCAATAGACCCAGCTGCATTTGCAACATCTAACAACCGAGGAACTATAGTTGACTCTGGTACAACATTGGCATACCTTGTTCAAGAAGCTTATGATCCTTTTGTCAATGCTATAACTACTGCTGTGTCACAGTTTGCCCGACCCATTATTTCTGAAGGAAACCAGTGTTATCTGGTCCCAACCAGCTTAGGTGATATATTTCCTCCAGTCAGTTTAAACTTTATGGGTGGAGCATCCATGGTTTTAAAACCAGAACAATACCTTATGCATTATGGTTTCCTTGATGGGGCTGCAAAGTGGTGCTTTGGTTTCCAGAAAGTGCAGGAGGGATTCACAATTTTAGGAGATCTTGTGCTAAAAGATAAGATTTTTGTATACGACTTGGCTAATCAACAGATCGGATGGACCAACTATGATTGTTCCCTACCTGTAAATGTCTCCATTGCTACGAGCAAGAGCAAGGATGAGTACATCAATGCAGGACAGCTGAGTGTCAGCAGCTCCCACATAACCATTGTCTACAAGTTGCTACATGTAAGAATCGCAGGTTCTCCTTATGCACATAATAATTTTCATGGAGTCCCCCTTTTTGTGATTCACTTCCAAGATTGA 1515 0.4601 MWGCVPVLLALAAVVAVVPATVVLPGRSFLPLERAIPLNRRVELEELRARDGARRRRILQGAVDGVVDFSVQGTSDPYFVGLYFTKVKMGSPPREFNVQIDTGSDILWVTCNSCSNCPKSSGLGIQLNFFDASSSSTAELVSCSDQICGYAVQTATSECSSQVNQCSYTFHYGDGSGTSGYYVSDVMYFDTVVGQSLLSNSSSTVVFGCSTFQSGELTKTEKAVDGIFGFGPGALSVVSQLSSRSMTPKVFSHCLKGDGNGGGILVLGQILEPSIVYSPLVPSQPHYNLNLEGIAVNGQLLSIDPAAFATSNNRGTIVDSGTTLAYLVQEAYDPFVNAITTAVSQFARPIISEGNQCYLVPTSLGDIFPPVSLNFMGGASMVLKPEQYLMHYGFLDGAAKWCFGFQKVQEGFTILGDLVLKDKIFVYDLANQQIGWTNYDCSLPVNVSIATSKSKDEYINAGQLSVSSSHITIVYKLLHVRIAGSPYAHNNFHGVPLFVIHFQD* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2800 504 Pfam Xylanase inhibitor N-terminal 83 269 IPR032861 -
Dod01g2800 504 Gene3D Acid Proteases 66 269 IPR021109 -
Dod01g2800 504 CDD pepsin_A_like_plant 83 441 IPR034161 -
Dod01g2800 504 Pfam Xylanase inhibitor C-terminal 286 437 IPR032799 -
Dod01g2800 504 ProSiteProfiles Peptidase family A1 domain profile. 83 437 IPR033121 -
Dod01g2800 504 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 460 - -
Dod01g2800 504 PRINTS Pepsin (A1) aspartic protease family signature 89 109 IPR001461 GO:0004190|GO:0006508
Dod01g2800 504 PRINTS Pepsin (A1) aspartic protease family signature 316 327 IPR001461 GO:0004190|GO:0006508
Dod01g2800 504 PRINTS Pepsin (A1) aspartic protease family signature 413 428 IPR001461 GO:0004190|GO:0006508
Dod01g2800 504 SUPERFAMILY Acid proteases 78 443 IPR021109 -
Dod01g2800 504 Gene3D Acid Proteases 270 446 IPR021109 -
Dod01g2800 504 PANTHER ASPARTYL PROTEASES 5 460 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2800 Dod-Chr1 68124492 68129661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2800 67 442 Miscellaneous Gene Families AT1G44130 27.089 5.67e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2800 - - gmx:100804147 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2800 01 68124492 68129661 Dod01g2800 01 68124492 68129661 ECH
Dod01g2800 01 68124492 68129661 Dod07g0168 07 2237918 2243519 PCT