Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2634 ATGGTAGGTATTATCTCATTGATAACAGGGTGGCGTGGTCCAAGTGGGTTTGGATCAGCTTCAACAGCAGAGCAGGTTACTAAAGGAATCGATGGAAACAACCTCACTGCAATTATCACAGGGGGAGCAAGTGGTATTGGGTTGGAGACAGCACGGGTGTTGGCTCTTCGAAAGGTGCATGTCATCCTTGCCGTACGAAACGTAGTTTCTGCAAAGGAGGCTAAACAGCAATTACTAGAGGAGAACGAGAATGCTCGAGTGGACATTTTGAAGCTCGATTTGTGCTCAGTCAAATCTGTCAGATCATTTGTCGACAACTTCCTCGCTCTTGATCTTCCTCTCAACATCTTAATTAACAATGCTGGAGTCATGTTCTGCCCTTTCAAGCTCTCAGAGGATGGGGTTGAGATGCAGTTTGCAACAAACCATCTTGGCCATTTCCACTTGGTCAACCTTCTTCTGGACAAAATGAAACAAACAGCAGAAACTACTGGGACTGAGGGCAGGATCATAAACTTGTCATCAATAGCCCATCACTACACTTACGGAAAGGGGATTAGGTTTGATAAGATCAATGAGCAAGAAGGTTATGGCAGCAAGAAGGCGTATGGGCAGTCTAAGTTAGCCAACATATTACATGCAAATGAGCTTTCTCGTCGTCTGAAGGAAGAGGGTGCGAACATCACAGTTAACTCAGTCCACCCAGGAGTGATTATGACTCCTCTTATGAGACATTCTTCTTGCCAAATGCACTTACTGAAGATCTTCACCTTCTACATATGGAAGAACGTCCCACAGGGAGCAGCCACCACATGCTATGTTGCTCTCCACCCAGGCATGAAAGGTGTAACTGGGAAGTACTTCGTGGATTGCAATCTGATTAAACCCAGTTCATTTGCCTCAAACCAACAGCTAGGAAGGAAGCTTTGGGATTTCAGCGAAAGGATGATCAATGCCATCTCAAAAGCTTAA 972 0.4516 MVGIISLITGWRGPSGFGSASTAEQVTKGIDGNNLTAIITGGASGIGLETARVLALRKVHVILAVRNVVSAKEAKQQLLEENENARVDILKLDLCSVKSVRSFVDNFLALDLPLNILINNAGVMFCPFKLSEDGVEMQFATNHLGHFHLVNLLLDKMKQTAETTGTEGRIINLSSIAHHYTYGKGIRFDKINEQEGYGSKKAYGQSKLANILHANELSRRLKEEGANITVNSVHPGVIMTPLMRHSSCQMHLLKIFTFYIWKNVPQGAATTCYVALHPGMKGVTGKYFVDCNLIKPSSFASNQQLGRKLWDFSERMINAISKA* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2634 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 296 IPR036291 -
Dod01g2634 323 PANTHER RETINOL DEHYDROGENASE 3 319 - -
Dod01g2634 323 Gene3D - 30 320 - -
Dod01g2634 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Dod01g2634 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Dod01g2634 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Dod01g2634 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Dod01g2634 323 Coils Coil 68 88 - -
Dod01g2634 323 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 3 319 - -
Dod01g2634 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Dod01g2634 323 Pfam short chain dehydrogenase 36 182 IPR002347 -
Dod01g2634 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Dod01g2634 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Dod01g2634 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2634 Dod-Chr1 65755176 65760333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2634 35 242 Miscellaneous Gene Families AT2G29150 28.169 2.31e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2634 K11153 - gmx:100801849 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2634 01 65755176 65760333 Dod01g2634 01 65755176 65760333 ECH
Dod01g2634 01 65755176 65760333 Dod07g0780 07 11073436 11079391 PCT