Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2408 ATGGAATCAACTCATGTAATATCTATTACCAATGGAGAGGAGAATAATGTTGCTCATCATGTGAAGGAGAGTAACACATTTCGGTTTCCACTTCCACCCATCAACATTTCCCGCCTTAGAGAGAAGAGAATCCACTGCTCTGTTGTCCCCATTACTTCCTATCTCAGGAGGGACAAGCGGATGAAAAGTAAGCATGACACTAGGAAGATGATCCACAGTGTCAAAGTGGGAATCTCCCTCGTTTTGGTCTCACTTTTTTACCTCTTGAACCCTCTCTTTGAGCAAGTTGGAGAAAATGCAATGTGGGCTATCATGACTGTTGTTGTAATCTTTGAGTTCTCTGCAGGAGCCACATTAGGAAAGGGCCTCAATCGTGGGATGGGAACTATATTAGGAGGTGGACTGGGTTGCATAGCAGCATATTTTGCCCAAAACATTGGAGGGGTTGGCAACTCGATCATCATTGGTATTTCTATTTTTATCTCTGGATCAGTAGCAACATATTTTCGACTGGTTCCAAGCATCAAGCAAAGATACGATTATGGAGTGTTGATATTCATGCTGACTTTCAATCTGGTTGTGGTGTCTGGCGTACGTGCCAATGAGACAGTGTGGGAAATAGCCCGCGAACGTCTCTTAACAATCGTGATGGGTTTCATTGTGTGCGTTTGTGTTAGTCTGTTCGTCTTCCCCTTGTGGGCCAGCGATGAACTTCATGATTCCACGGTATCAAGGATCCTGGACCTTGCCAACACTATTCAAGGCTGCTTGGAGGAAGACGACAAATTCGAAAGCGAAACGGAGAAAGAGCCCAGTGTTAACTTCACCGTTTGCAAGTCTGTGTTGAACTCCAAGTCAAAGGATGAATTATTGGCAAATTTCGCAAAATGGGAACCCTGGCATGGAAAATTTGGATTTTCCTACCCATGGGAGAAGTACTTAAAAATCGGAGAGGTTCTTCGAGAACTGGCTGCATTTATTCTTGCAGTGGGACGTTGCCTCCAAGCGTCAAAACAGGCCATGGCATTGATGAGGCAATCACCGTCGGTCCAATTAGAATCATGGGAAGCAATTGGGTCAAAGGTTGCGTGGGCTCTAAGGGAACTAGGAGAGAGCATGAAGCAAATGAGGAAATGCAAAGGAGAGGGCACCATTTCGGCCAAGTTGAAAGCAGCGAGAACAGATCTAAGCTTGGTGATTTCCACGTCCAAGATATCTGCACTTGATAATGCCCAAGTCCTAGCGATTGCAAGCTTCGTGTTCTTGCTCACCCAAGTGTTGGAGAAGGTGGAGGACTTGGTGAAAGAGGTGGAGGAACTTGAAGAAATTGCTCATTTTCGTACTCATTTACCTCCAGTATCGTCTTCGTAG 1371 0.4522 MESTHVISITNGEENNVAHHVKESNTFRFPLPPINISRLREKRIHCSVVPITSYLRRDKRMKSKHDTRKMIHSVKVGISLVLVSLFYLLNPLFEQVGENAMWAIMTVVVIFEFSAGATLGKGLNRGMGTILGGGLGCIAAYFAQNIGGVGNSIIIGISIFISGSVATYFRLVPSIKQRYDYGVLIFMLTFNLVVVSGVRANETVWEIARERLLTIVMGFIVCVCVSLFVFPLWASDELHDSTVSRILDLANTIQGCLEEDDKFESETEKEPSVNFTVCKSVLNSKSKDELLANFAKWEPWHGKFGFSYPWEKYLKIGEVLRELAAFILAVGRCLQASKQAMALMRQSPSVQLESWEAIGSKVAWALRELGESMKQMRKCKGEGTISAKLKAARTDLSLVISTSKISALDNAQVLAIASFVFLLTQVLEKVEDLVKEVEELEEIAHFRTHLPPVSSS* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2408 456 Coils Coil 423 443 - -
Dod01g2408 456 Pfam Aluminium activated malate transporter 64 440 IPR020966 GO:0015743
Dod01g2408 456 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 5 448 - -
Dod01g2408 456 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 12-LIKE 5 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2408 Dod-Chr1 62809418 62813086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2408 64 402 Miscellaneous Gene Families AT5G46600 43.143 3.15e-92 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2408 - - gmx:100779890 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2408 01 62809418 62813086 Dod01g2408 01 62809418 62813086 ECH
Dod01g2408 01 62809418 62813086 Dod07g0538 07 7142347 7145658 PCT