Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2164 ATGTGGGCTCTTCGTCGAGCTTCGTTCCCTCTCAGGAACCAAAGGTTTAATGTAAGAGCTTCTTGTGCTTCTTGCATCAAATCAATGCCAGCTACTTGTGTGGAACATGAGGCTGGTGTCTCTGAGTCTCCTCGAATGACATGTGGTGGTTTTCTGTCACCAAGGACTTTTTACCATTCAGGACATGAGTCCCTGAAATTTCCTGAGAACAGACGTGAACTTTCTTCGCAAGCTGATGCAAGTAGCACAAAGGATCAGGATGATTTGCAGGATGGGTTTTCTGAGCTGGAGACTGGTGACGGAAATGGAAATGGAAATGAAAACCTATTAACTTCTGATACAGACCTATCTGATGACAACGAAGATGTTGAGGAAACACACAATGAACTCGAGTTATCAGATACTGAGGTTGAACCAAGTAAGAAAAAATCATCTCGTAGAAGGGCTGAGTCAGAAATATTCAAGTTGATCGTTGGTGCTCCGGGTAGTTCTGTTCATTCGGTTATGGACAAGTGGGTTGAAGAAGGGAAAGAACTTAGCAGACAAGAGGTCTCGCTGGCCGTGGTTAATCTTCGGAGGCGTACAATGTATGCAAAAGCTTTGCAGCTCTTGGAATGGGTAGAGTCAAAAAAGCAGCTTGAATTTACTGAGAAAGATTATGCTTCTCGACTTGATTTGATTGCCAAATCACGTGGCCTACAGAAGGCAGAGATTCACATTGATACTATTCCAAAATCTTTTAGAGGGGAGATAGTATACCGAACTTTTTTAGCAAGTTGTGTTAGTCAGAACAATTTAAAGAAAGCAGAGGAAACTTTCAATAAAATGAAGGATTTGGGCTTTCCTGTTACATCATTTGTTTGCAACCAGTTGCTTATGTTGTATAAGAGGAATGACAAGAAGAAAATAGCTGATGTGTTATTGTTGATGGAAAATGAGAATGTCAAACCTTCTCCTTTGACTTACAAAGTATTAATTGACACAAAAGGCCAGTCCAATGACATTGGTGGAATGGATCAAATTGTTGAGACAATGAAGGCTGAAGGGATTGAACCAGACATCCAAACAAAGGCAGTTTTGGTTGGGCATTACATATCTGCTGGGCTTCAAGAAAAAGCTGAAGCTATGTTGAAGGAGATGGAAGGTGAAAACCTGAAAGAAAATAGTTGGGTATGCCGATATTTGCTTCCCCTCTATGCAAACCTTGGCAAGGCAGATGAAGTGGGAAGAATTTGGGAGGTTTGTGAGTCACACCGTCGGTTGGAGGAGTGTTTGGCTGCAATTGAAGCTTTTGGGAAGTTGAAGAAAATTGATGAAGCAGAGGCAGTTTTCGAGATGATGCAAAAGAAATGGAAGCTTTCTTCCAAGAACTGCTCAGTAATGCTCAAGGTTTATGCTAATAATAAGATGGTAACGAAGGGCAAGGATCTTATTAAGCGAATGGCAGAAAATGGGTGCAGAATAGGCCCATTGACCTGGGACGCATTAGTGAAACTTTATGTCCAAGCAGGCGAAGTGGAGAAGGCAGATTCTGTTCTGCAGAAGGCAATCCAGCAGAATCAAGTGAAGCCATTATTTTCTTCTTACATTACTATTATGGAGCAGTACGCTAAGAGGGGTGACGTCCATAATGCAGAAAAGATATTCCATAGAATGAAACAAGCTGGTTATGCATCTCGAACGAGGCAGTATCAAGTTCTAGTACAGGCCTATATAAACGCCAAGCTTCCAGCCTATGGGATTAGGGACAGGATGAAAGCTGATGACGTATTTCCCAACAGAGGTTTTGCGAATCAGTTGATTCAAGTTGATGGGTTTAGGAAGAACCCGGTTTCAGATTTGCTTGATTGA 1851 0.4187 MWALRRASFPLRNQRFNVRASCASCIKSMPATCVEHEAGVSESPRMTCGGFLSPRTFYHSGHESLKFPENRRELSSQADASSTKDQDDLQDGFSELETGDGNGNGNENLLTSDTDLSDDNEDVEETHNELELSDTEVEPSKKKSSRRRAESEIFKLIVGAPGSSVHSVMDKWVEEGKELSRQEVSLAVVNLRRRTMYAKALQLLEWVESKKQLEFTEKDYASRLDLIAKSRGLQKAEIHIDTIPKSFRGEIVYRTFLASCVSQNNLKKAEETFNKMKDLGFPVTSFVCNQLLMLYKRNDKKKIADVLLLMENENVKPSPLTYKVLIDTKGQSNDIGGMDQIVETMKAEGIEPDIQTKAVLVGHYISAGLQEKAEAMLKEMEGENLKENSWVCRYLLPLYANLGKADEVGRIWEVCESHRRLEECLAAIEAFGKLKKIDEAEAVFEMMQKKWKLSSKNCSVMLKVYANNKMVTKGKDLIKRMAENGCRIGPLTWDALVKLYVQAGEVEKADSVLQKAIQQNQVKPLFSSYITIMEQYAKRGDVHNAEKIFHRMKQAGYASRTRQYQVLVQAYINAKLPAYGIRDRMKADDVFPNRGFANQLIQVDGFRKNPVSDLLD* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2164 616 Gene3D Tetratricopeptide repeat domain 428 614 IPR011990 GO:0005515
Dod01g2164 616 SUPERFAMILY TPR-like 376 555 IPR011990 GO:0005515
Dod01g2164 616 MobiDBLite consensus disorder prediction 114 129 - -
Dod01g2164 616 PANTHER OS01G0280400 PROTEIN 33 616 - -
Dod01g2164 616 PANTHER OS12G0527900 PROTEIN 33 616 - -
Dod01g2164 616 Pfam PPR repeat 528 556 IPR002885 -
Dod01g2164 616 Pfam PPR repeat 459 486 IPR002885 -
Dod01g2164 616 Pfam PPR repeat 492 515 IPR002885 -
Dod01g2164 616 Pfam PPR repeat 428 450 IPR002885 -
Dod01g2164 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 559 IPR002885 -
Dod01g2164 616 TIGRFAM PPR: pentatricopeptide repeat domain 252 284 IPR002885 -
Dod01g2164 616 TIGRFAM PPR: pentatricopeptide repeat domain 428 450 IPR002885 -
Dod01g2164 616 TIGRFAM PPR: pentatricopeptide repeat domain 528 557 IPR002885 -
Dod01g2164 616 TIGRFAM PPR: pentatricopeptide repeat domain 458 487 IPR002885 -
Dod01g2164 616 MobiDBLite consensus disorder prediction 68 146 - -
Dod01g2164 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Dod01g2164 616 MobiDBLite consensus disorder prediction 130 146 - -
Dod01g2164 616 Gene3D Tetratricopeptide repeat domain 249 427 IPR011990 GO:0005515
Dod01g2164 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 489 524 IPR002885 -
Dod01g2164 616 Pfam Pentacotripeptide-repeat region of PRORP 252 411 IPR033443 -
Dod01g2164 616 MobiDBLite consensus disorder prediction 97 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2164 Dod-Chr1 58536522 58540196 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2164 161 556 EF-hand Containing Proteins AT1G02150 24.450 1.28e-33 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2164 - - mtr:MTR_7g089770 819.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2164 01 58536522 58540196 Dod06g1193 06 16060005 16060724 ECH
Dod01g2164 01 58536522 58540196 Dod01g2164 01 58536522 58540196 ECH