Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1968 ATGAGAGAGGTAATAAGTATTCACATTGGACAAGCTGGAATTCAGGTGGGGAACTCATGTTGGGAGCTGTATTGCCTTGAGCATGAAATTCAACCTGATGGCTTGATGCCCAGAATCATAGTTTGCCATATATGTTGTACCCCACTACCAGAAATGATACCTCAGTTGGCAGTTGCGCATGATGCATTTAACACCTTCTTCAGTGAGACGGGATCTGGCAAGCATGTGCCAAGGGCTGTGTTTGTTGATCTGGAACCTAGTGTTATTGATGAAGTAAGGACTGGTCCTTACAGACAACTCTTTCACCCTGAGCAATTAATTGCTGGAAAGGAAGATGCTGCTAATAATTTTGCAAGGGGACATTACACTGTTGGAAGAGAGATCATTGAGCTATGCCTTGATCGCATCAGAAAATTGGCGGACAACTGCACTGGTTTGCAAGGATTCTTGGTTTTCAATGCTGTTGGTGGTGGCACTGGTTCTGGTTTGGGATCATTACTTTTGGAACGACTTTCTGTAGATTATGGGAAGAAGTCTAAACTTGGATTTACCATCTACCCTTCTCCTCAGGTATCTACTGCAGTTGTTGAACCTTACAACAGTGTTCTTTCCACTCATTCTCTTCTTGAGCATACTGATGTGGTTGTGCTTTTGGACAATGAAGCAATATATGATATCTGCAGAAGATCATTAGATATAGAAAGGCCAACTTACAAAAATTTGAATCGTTTGATTTCTCAAATTATCTCTTCCTTGACCACTTCCTTGAGATTTGATGGGGCGATTAATGTGGACGTTACTGAGTTCCAGACTAACCTTGTGCCATATCCTCGTATCCATTTTATGCTCTCATCTTATGCACCCGTGATATCTGCTGCAAAGGCCTATCATGAGCAGCTATCAATTCCTGAGATCACCAGTGCTGTTTTTGAGCCGTCAAATATGATGGCTAAGTGCGATCCAAGACATGGAAAGTACATGGCATGCTGCCTAATGTATCGAGGAGATGTTGTGCCCAAAGATGTAAATGCAGCTGTTTCAAACATCAAGACAAAGCGAACAGTTCAGTTTGTTGACTGGTGTCCAACTGGTTTCAAGTGTGGTATAAACTACCAGCCTCCAACAGTTGTACCAGGAGGTGACCTTGCCAAGGTGCAGCGGGCAGTTTGTATGATAAGCAACAACACAGCTGTTGCCGAGGTTTTCTCTCGCATCGACTACAAATTTGATCTCATGTATTCTAAGCGCGCATTTGTCCACTGGTATGTTGGCGAAGGGATGGAAGAAGGTGAATTCGCAGAAGCCAGGGAGGATCTCGCTGCACTTGAAAAGGACTATGAAGAAGTTGCAGCAGAAGAACATGAAGAAGAAGAAACTGAAGGTGGTTACTGA 1392 0.4332 MREVISIHIGQAGIQVGNSCWELYCLEHEIQPDGLMPRIIVCHICCTPLPEMIPQLAVAHDAFNTFFSETGSGKHVPRAVFVDLEPSVIDEVRTGPYRQLFHPEQLIAGKEDAANNFARGHYTVGREIIELCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVVVLLDNEAIYDICRRSLDIERPTYKNLNRLISQIISSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSIPEITSAVFEPSNMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVSNIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDYKFDLMYSKRAFVHWYVGEGMEEGEFAEAREDLAALEKDYEEVAAEEHEEEETEGGY* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1968 463 PANTHER TUBULIN ALPHA CHAIN 1 457 - -
Dod01g1968 463 PRINTS Alpha-tubulin signature 374 393 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dod01g1968 463 PRINTS Alpha-tubulin signature 175 186 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dod01g1968 463 PRINTS Alpha-tubulin signature 228 240 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dod01g1968 463 PRINTS Alpha-tubulin signature 335 356 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dod01g1968 463 PRINTS Alpha-tubulin signature 134 142 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dod01g1968 463 PRINTS Alpha-tubulin signature 436 452 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dod01g1968 463 PRINTS Alpha-tubulin signature 162 174 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dod01g1968 463 PRINTS Alpha-tubulin signature 18 33 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dod01g1968 463 PRINTS Alpha-tubulin signature 102 115 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dod01g1968 463 PRINTS Alpha-tubulin signature 361 374 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dod01g1968 463 PRINTS Alpha-tubulin signature 288 303 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dod01g1968 463 PRINTS Alpha-tubulin signature 399 415 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Dod01g1968 463 SMART Tubulin_C_4 262 407 IPR018316 -
Dod01g1968 463 SUPERFAMILY Tubulin C-terminal domain-like 260 449 IPR008280 -
Dod01g1968 463 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 258 IPR036525 -
Dod01g1968 463 SMART Tubulin_4 63 260 IPR003008 GO:0005525
Dod01g1968 463 Gene3D - 283 397 IPR037103 -
Dod01g1968 463 PRINTS Tubulin signature 67 86 IPR000217 GO:0005874|GO:0007017
Dod01g1968 463 PRINTS Tubulin signature 109 120 IPR000217 GO:0005874|GO:0007017
Dod01g1968 463 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Dod01g1968 463 PRINTS Tubulin signature 122 146 IPR000217 GO:0005874|GO:0007017
Dod01g1968 463 PRINTS Tubulin signature 394 422 IPR000217 GO:0005874|GO:0007017
Dod01g1968 463 PRINTS Tubulin signature 167 188 IPR000217 GO:0005874|GO:0007017
Dod01g1968 463 PRINTS Tubulin signature 206 226 IPR000217 GO:0005874|GO:0007017
Dod01g1968 463 PRINTS Tubulin signature 148 166 IPR000217 GO:0005874|GO:0007017
Dod01g1968 463 PRINTS Tubulin signature 192 205 IPR000217 GO:0005874|GO:0007017
Dod01g1968 463 Gene3D Helix hairpin bin 398 450 IPR023123 -
Dod01g1968 463 CDD alpha_tubulin 2 446 - -
Dod01g1968 463 Coils Coil 432 459 - -
Dod01g1968 463 Gene3D Tubulin/FtsZ, GTPase domain 1 282 IPR036525 -
Dod01g1968 463 Pfam Tubulin C-terminal domain 277 406 IPR018316 -
Dod01g1968 463 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 156 162 IPR017975 GO:0005525|GO:0005874|GO:0007017
Dod01g1968 463 PANTHER TUBULIN 1 457 IPR000217 GO:0005874|GO:0007017
Dod01g1968 463 Pfam Tubulin/FtsZ family, GTPase domain 3 227 IPR003008 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1968 Dod-Chr1 55209651 55213417 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1968 K07374 - gmx:100796371 796.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1968 01 55209651 55213417 Dod01g1968 01 55209651 55213417 ECH
Dod01g1968 01 55209651 55213417 Dod02g2045 02 37931846 37935634 PCT