Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1936 ATGGGAAAGGTGTGGTTTTTGGTGGTGATGGTGGTAGCAATGGGTTGTTGTTGGTTGGGGTGTGTTTCGGGGCTTGGTGTGAATTGGGGGACGCAGGCGACGCACAAGCTGCCACCGGACACGGTGGTGCAGATGCTGAAGGACAATGGGATTCAGAAAGTGAAGCTTTTCGATGCTGATGATTCCACCATGAGTGCCCTTGCTGGGTCTGGGATCGAGGTCATGGTTGCCATCCCAAACAACCAGCTCGCTGATATGAATAGCTATGACCGCGCCAAACAGTGGGTTAAGAAGAATGTCACTCGTTTCAACTTCAATGGAGGAGTTAACATCAAATATGTAGCTGTTGGAAACGAGCCATTTTTGAAATCCTACAATAATTCATTCCTGAATGTCACTCTACCTGCACTACAGAACATTCAAAATGCCCTTAATGAAGCTGGTCTTGATAAGATAAAGGCTACAGTGCCCTTAAATGCTGATGTTTACCAGTCTCCAGATAACAACCCTGTACCATCTGCAGGAATATTCAGGCCTGATATAGCAGATCTCATGACCCAGATAGTGCAATTTCTCAGCAAGAATGGTGCACCATTCACAGTTAACATTTACCCCTTCTTAAGTCTCTATGGGAATGATGATTTCCCTTTTGACTATGCCTTCTTTGATGGGGTGTCCAATCCCATAAATGATAATGGCATTTCATACACCAATGTCTTTGATGCAAATTTTGATACCTTGGTTGCTGCCCTCAAATCGGTGGGATTAGGGGACTTACCCATTTTGGTGGGAGAAGTGGGATGGCCTACCGATGGGGACAAGAATGCCAATTCTGGCAATGCTCTAAGGTTCTACAATGGACTTCTACTGAGGCTCGCCGGAAACAAAGGAACCCCGCGTCGCCCTGGATACATTGAAGTTTACCTGTTTGCACTCATTGATGAGGATGCCAAGAGCATTGCTCCGGGAAACTTCGAGCGCCACTGGGGAATATTTCGGTATGATGGGCAGCCAAAGTTTCAAATGGATCTTTCTGGTCAGGGCCAAAACAAGATGCTCATAGGTGCAAAGAATGTGAAGTATCTTTCTCCAAATTGGTGCGTGTTTAATCCGAATGCCAAGGATCTCAGCAAACTTGCAGATAATATTAATTATGCTTGCTCTAATGGAGACTGCACTTCACTTGGTTATGGCTCCTCTTGCAACAACTTGGATGCTAATGGGAATGCCTCATATGCATTTAATATGTATTTCCAGGTGCAAAATCAGAACCCCGGGGCCTGCAATTTTCAAGGTTTGGCCAAGCTTTCCACTGACAATGTCTCAACTCCTACTTGCAATTTTCTTATTCAGATAGTTGGTTCTTCAGCCTCCTCCTTGATTCCCTCTCTTGTTAGTCTCTTATTGTTACTTTATCCATGA 1422 0.4494 MGKVWFLVVMVVAMGCCWLGCVSGLGVNWGTQATHKLPPDTVVQMLKDNGIQKVKLFDADDSTMSALAGSGIEVMVAIPNNQLADMNSYDRAKQWVKKNVTRFNFNGGVNIKYVAVGNEPFLKSYNNSFLNVTLPALQNIQNALNEAGLDKIKATVPLNADVYQSPDNNPVPSAGIFRPDIADLMTQIVQFLSKNGAPFTVNIYPFLSLYGNDDFPFDYAFFDGVSNPINDNGISYTNVFDANFDTLVAALKSVGLGDLPILVGEVGWPTDGDKNANSGNALRFYNGLLLRLAGNKGTPRRPGYIEVYLFALIDEDAKSIAPGNFERHWGIFRYDGQPKFQMDLSGQGQNKMLIGAKNVKYLSPNWCVFNPNAKDLSKLADNINYACSNGDCTSLGYGSSCNNLDANGNASYAFNMYFQVQNQNPGACNFQGLAKLSTDNVSTPTCNFLIQIVGSSASSLIPSLVSLLLLLYP* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1936 473 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Dod01g1936 473 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 3 464 IPR044965 GO:0004553|GO:0005975
Dod01g1936 473 SMART X8_cls 365 448 IPR012946 -
Dod01g1936 473 Gene3D - 361 459 - -
Dod01g1936 473 PANTHER GLYCOSIDE HYDROLASE, FAMILY 17, X8 3 464 - -
Dod01g1936 473 Pfam Glycosyl hydrolases family 17 25 343 IPR000490 GO:0004553|GO:0005975
Dod01g1936 473 ProSitePatterns Glycosyl hydrolases family 17 signature. 259 272 IPR000490 GO:0004553|GO:0005975
Dod01g1936 473 Gene3D Glycosidases 24 351 - -
Dod01g1936 473 SUPERFAMILY (Trans)glycosidases 25 343 IPR017853 -
Dod01g1936 473 Pfam X8 domain 366 434 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1936 Dod-Chr1 54549944 54554147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1936 7 453 Miscellaneous Gene Families AT2G19440 74.777 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1936 - - gmx:100815300 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1936 01 54549944 54554147 Dod01g1936 01 54549944 54554147 ECH
Dod01g1936 01 54549944 54554147 Dod02g2033 02 37672360 37675642 PCT