Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1001 ATGGCTGGCTTTTGCGGTTGTAACTCGACGTACTTGGCATTTAGCAAGCCAGCAACAAGAGCAATAAGCCTCTCTGCTACCTCTGTCTCTCCTTTGCTCACTTTCCAGGCCCCACTACTCTCAGCCATGGTTGCAGCAGCTGAAGCAATGCCTGAGAAACCCCTTCAAGGAGTGCCTCTTCAAGCAGCAACAGACCCCACTTTGACTCCTCCCTCTAGAAGGTTGGAAGGCAAAATTGCTATTGTAACTGGGGGTGCCAGAGGGATCGGGGAAGCAGCAGTGAGGCTATTTGTGAAGCACGGTGCAAAGGTGGTGATTGCAGATATTGAGGACTCGCTTGGAACCATGGTTGCAGAGACACTATCTCCTTCAGCCACCTATGTCCACTGTGATGTTAGCTTGGAAGAAGAAGTTGAGAATTTGGTCACTTGCACAGTTTCTCGCTATGGACACCTTGATATCATGTTCAACAATGCTGGTATGCTAGGGAACCAGAGCAAGAACAAGAGCATCCTCAATTTTGACCCTGATGAATTTGACATGATCATGAGGGTGAATGTTAAGGGTGTTGCATTAGGGACCAAGCATGCTGCTAAGGTCATGGCTCCTAGAGGAATTGGTTGCATTATCAACACTGCTAGTGTAGCTAGTGTCATGGGAGGTCTTGGACCACATGCTTACACGGCTTCAAAGCATGCCATAGTTGGGATCACAAAGAACACTGCTTGTGAGTTGGGGAGGTATGGAATAAGGGTCAATTGCATTTCCCCATTTGGGGTTGCCACATCCATGCTTGTGAATGCATGGAGATCAACAAGTCATGAAGAACAAGATGATGATGAGGGAATCATCAATTTTGGGTTGCCTTTCCCTGAGGAAGTGGAGAAGATGGAGGAGTTTGTGAGAGGGCTTGGTAATTTGAGAGGAGCAACTTTGAGGCCTAAGGATGTTGCTGAGGCTGCACTTTATCTCGCTAGTGATGAATCCGTGTATGTTAGTGGTCATAATCTTGTTGTGGATGGGGGAGTCACTTCGTCAAGAAATTGTGTTGGCCTGTAA 1059 0.474 MAGFCGCNSTYLAFSKPATRAISLSATSVSPLLTFQAPLLSAMVAAAEAMPEKPLQGVPLQAATDPTLTPPSRRLEGKIAIVTGGARGIGEAAVRLFVKHGAKVVIADIEDSLGTMVAETLSPSATYVHCDVSLEEEVENLVTCTVSRYGHLDIMFNNAGMLGNQSKNKSILNFDPDEFDMIMRVNVKGVALGTKHAAKVMAPRGIGCIINTASVASVMGGLGPHAYTASKHAIVGITKNTACELGRYGIRVNCISPFGVATSMLVNAWRSTSHEEQDDDEGIINFGLPFPEEVEKMEEFVRGLGNLRGATLRPKDVAEAALYLASDESVYVSGHNLVVDGGVTSSRNCVGL* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1001 352 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 227 246 IPR002347 -
Dod01g1001 352 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 207 215 IPR002347 -
Dod01g1001 352 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 161 IPR002347 -
Dod01g1001 352 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 49 352 - -
Dod01g1001 352 Gene3D - 68 350 - -
Dod01g1001 352 CDD secoisolariciresinol-DH_like_SDR_c 74 344 IPR045309 GO:0016616
Dod01g1001 352 PRINTS Glucose/ribitol dehydrogenase family signature 150 161 IPR002347 -
Dod01g1001 352 PRINTS Glucose/ribitol dehydrogenase family signature 201 217 IPR002347 -
Dod01g1001 352 PRINTS Glucose/ribitol dehydrogenase family signature 79 96 IPR002347 -
Dod01g1001 352 PRINTS Glucose/ribitol dehydrogenase family signature 307 327 IPR002347 -
Dod01g1001 352 PRINTS Glucose/ribitol dehydrogenase family signature 227 246 IPR002347 -
Dod01g1001 352 PRINTS Glucose/ribitol dehydrogenase family signature 248 265 IPR002347 -
Dod01g1001 352 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 2A-LIKE 49 352 - -
Dod01g1001 352 Pfam Enoyl-(Acyl carrier protein) reductase 84 275 - -
Dod01g1001 352 Pfam Enoyl-(Acyl carrier protein) reductase 296 344 - -
Dod01g1001 352 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 76 344 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1001 Dod-Chr1 18776270 18777932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1001 68 344 Acyl Lipid Metabolism Gene Families AT3G55290 31.164 2.06e-24 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1001 - - gmx:100775210 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1001 01 18776270 18777932 Dod01g1001 01 18776270 18777932 ECH
Dod07g1639 07 43740819 43742019 Dod01g1001 01 18776270 18777932 PCT