Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0941 ATGAGCACTTGTACCACAAAGCTGAGTTCTTTCTTATTCTTGTGTGTTTGGATTTTGCTTTGTGGGTGTTGTTTTGGTAGGTTTGTGGTGGAGAAGAACAGCTTGAAGGTTACTTCTCCGAAATCGTTGAAGGGTACTTATGAGTGTGCAATCGGGAACTTTGGAGTCCCAAAATATGGTGGAACAATGGTTGGTTCTGTGGTGTACCCGAAGGTGAATCAGAAGGGTTGCAAGAGCTTCAGTGATGTTGATACTTCGTTTCAGTCCAAGCCTGGTAGCTTCCCCACTTTTCTTCTTGTTGATCGTGGAGATTGCTACTTCACTTTGAAGGCTTGGAATGCACAGAATGGTGGGGCAGCAGCTATTCTTGTAGCTGATGACAAGTCAGAAACATTGATCACCATGGATACTCCTGAAGAAATGAATGCTGGCAAAGGTGATTATGTGGAAAAGATTACCATTCCATCTGCCCTTATCAGCAAATCCCTGGCAGATAGCATCAAGGAGGCTCTCTCTAATGGGGAGATGGTTAACATTAACCTTGATTGGACGGAGGCTCTTCCGCATCCCGATGAGAGGGTCGAGTACGAGTTGTGGACGAATAGCAATGATGAGTGTGGGCCGAAGTGTGACAATCTAATTGATTTTATCAAGGACTTTAAAGGTGCTGCTCAGCTCCTCGAGCGGAAAGGGTTCACTCAGTTTACCCCTCACTATATAACTTGGTATTGCCCTGAAGCATTTCTCTTAAGCAAACAGTGCAAGTCTCAGTGCATAAACAATGGGAGGTATTGTGCTCCGGATCCCGAGCAAGATTTCAGTAGAGGGTATGATGGCAAAGATGTTGTTATTCAAAACTTAAGACAAGCTTGCTTCTATAAAGTGGCAAATGAAAGTGGAAAGCCTTGGCAATGGTGGGACTATGTCACTGACTTTGCAATCCGTTGCCCAATGAAAGAGAATAAGTTCACTGAAGATTGCTCCGATCATGTTATTAAATCTCTTGGTGCTGATCTGAAGAAGATTAAAGATTGCGTTGGTGATACTAAGGCTGATGTTGACAACCCTGTTCTCAAGGCTGAACAGGTTTCACAGATTGGCAAAGGCACCCGTGGTGATGTTACAATACTGCCTACTCTTGTTATAAACAACAGACAGTATAGAGGTAAGTTGTCAAGAGCAGCAGTTCTCAAGGCAGTCTGTGCAGGTTTTCAAGAGACTACTGAGCCATCAATTTGTTTAACACCAGAAATGCAAACAAATGAGTGTCTGGAGAACAATGGTGGCTGTTGGGAGGACAAATCTGCTAACATTACTGCATGCAGGGACACCTTCCGAGGAAGAGTATGTGAATGCCCTATTGTACAAAATGTGAGATTTGTTGGTGATGGATATACCCACTGTGAAGCTTCAGGGGTGCTGAGGTGTAGAATCAACAATGGAGGTTGTTGGAAGGGATCACAAGATGGCAGGGCTTACTCGGCTTGTATCGATGACCATACAAATGGTTGTAAGTGTCCACCTGGGTTCAAAGGTGATGGAGTCCACTCATGCGAAGATATCGATGAGTGCAAAGAGAAATCGGCTTGCCAGTGCAAAGAGTGCAGATGCAAAAATACCTGGGGGAGTTATGAGTGCAAATGCAGTAGTGGTTTGTTCTACTCGCAAGAAAATGACGTGTGTATTGGTAAGTATACTGCTTCAATGACCAGTGGGAATTTTGTGGGGATGATCATCCTCGTCATGGCTGTTGCTGGTGTTGGGGGATATGCATTTTACAAGTTTAGAATCCAGAGATATATGGATTCTGAGATAAGGGCAATTATGGCTCAATACATGCCCTTGGACAATCAACCAGAGAACCCTAATCAAGTTCTTCATGATATCTAG 1890 0.4392 MSTCTTKLSSFLFLCVWILLCGCCFGRFVVEKNSLKVTSPKSLKGTYECAIGNFGVPKYGGTMVGSVVYPKVNQKGCKSFSDVDTSFQSKPGSFPTFLLVDRGDCYFTLKAWNAQNGGAAAILVADDKSETLITMDTPEEMNAGKGDYVEKITIPSALISKSLADSIKEALSNGEMVNINLDWTEALPHPDERVEYELWTNSNDECGPKCDNLIDFIKDFKGAAQLLERKGFTQFTPHYITWYCPEAFLLSKQCKSQCINNGRYCAPDPEQDFSRGYDGKDVVIQNLRQACFYKVANESGKPWQWWDYVTDFAIRCPMKENKFTEDCSDHVIKSLGADLKKIKDCVGDTKADVDNPVLKAEQVSQIGKGTRGDVTILPTLVINNRQYRGKLSRAAVLKAVCAGFQETTEPSICLTPEMQTNECLENNGGCWEDKSANITACRDTFRGRVCECPIVQNVRFVGDGYTHCEASGVLRCRINNGGCWKGSQDGRAYSACIDDHTNGCKCPPGFKGDGVHSCEDIDECKEKSACQCKECRCKNTWGSYECKCSSGLFYSQENDVCIGKYTASMTSGNFVGMIILVMAVAGVGGYAFYKFRIQRYMDSEIRAIMAQYMPLDNQPENPNQVLHDI* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0941 629 Pfam PA domain 65 166 IPR003137 -
Dod01g0941 629 Gene3D Laminin 414 459 - -
Dod01g0941 629 PANTHER EGF-LIKE CALCIUM-BINDING DOMAIN, PA DOMAIN, THIOREDOXIN-LIKE PROTEIN-RELATED 15 608 - -
Dod01g0941 629 ProSitePatterns Calcium-binding EGF-like domain signature. 520 546 IPR018097 GO:0005509
Dod01g0941 629 SUPERFAMILY EGF/Laminin 516 562 - -
Dod01g0941 629 SMART egfca_6 520 562 IPR001881 GO:0005509
Dod01g0941 629 SUPERFAMILY PA domain 97 176 IPR046450 -
Dod01g0941 629 CDD PA_VSR 53 181 - -
Dod01g0941 629 CDD EGF_CA 520 551 - -
Dod01g0941 629 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 15 608 - -
Dod01g0941 629 Gene3D Laminin 474 562 - -
Dod01g0941 629 Gene3D - 25 190 - -
Dod01g0941 629 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0941 Dod-Chr1 17258811 17264643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0941 12 629 Miscellaneous Gene Families AT3G52850 72.097 0.0 946
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0941 - - gmx:100807514 1109.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0941 01 17258811 17264643 Dod01g0941 01 17258811 17264643 ECH
Dod01g0941 01 17258811 17264643 Dod07g2225 07 54016948 54020946 PCT