Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0748 ATGTCAGAAATTGACATGGCAGTTATTAAACCTGAGATGATGAAGCCCTATGTCTGGCTTCAGACTTCAGATGGTTCAATCCAAGAAGTGGAGCAAGAAATCGCAATGTTTTGCCCTCTAATGCGAGAAGCAATACAAAAAAGCCTGGGATCTTCCAAGAATTGTGCAATATGTCTTCCTCAACGAGTCACTCCTGCCATGCTGAGCTTAGTTCTTGATTATTGCCGATTTCATCAAGTACCAGGTCGCTCAAACAAGGAGCGGAAGTCTTATGATGAGAAATTCATTCGCATGGACACAAAGCAGCTGTGCGAGTTGACATCTGCTGCAGACAGCCTTCAGTTGAAGTCATTGGTTGATCTTACCAGTCGTACACTTGCTCGAATAATTGAAGGAAAAGCACCCGATGAAATACGCGACATATTTAATTTGCCTGATGATCTTACTGAGGAAGAGAAATTGGAGCCCTTGAAGAACACAACTGCTGATCCAAGGATCAGGCTTTTGAACCGCTTGTATGCCAAAAAGAGGAAAGAACTGAAAGAGCGTGAGAGGCTAAAGAATGTTGAAGTTGAAGGACAGCATGTGGATGAACGTTCAGTTGATGACCTCTTGTCTTATATTAATGGAAATGATGGAGATCCAAAGGGGATGAAATCTTCTAAGAATAAAAAGAAGAACCGAAGAAAAAAAGAGCAACAAAAGAGCTCTTCTTTGAAGGAAGCTTCTGAACTGAATGACAAGGAGGTAAATGGTCAAAATATCAGCCCCGGAACTGTTGAAGTTAATAGAACTGCTGAGGCCTCACATTCTCATACAGAATATGACGATGGAGATATAGATGACATCGATCCTGCATTACGGGAAAAAATCGACAGCGTAGTTGCAGTGGCAGATCACTAG 903 0.4197 MSEIDMAVIKPEMMKPYVWLQTSDGSIQEVEQEIAMFCPLMREAIQKSLGSSKNCAICLPQRVTPAMLSLVLDYCRFHQVPGRSNKERKSYDEKFIRMDTKQLCELTSAADSLQLKSLVDLTSRTLARIIEGKAPDEIRDIFNLPDDLTEEEKLEPLKNTTADPRIRLLNRLYAKKRKELKERERLKNVEVEGQHVDERSVDDLLSYINGNDGDPKGMKSSKNKKKNRRKKEQQKSSSLKEASELNDKEVNGQNISPGTVEVNRTAEASHSHTEYDDGDIDDIDPALREKIDSVVAVADH* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0748 300 PANTHER SKP1 1 266 IPR016897 GO:0006511
Dod01g0748 300 MobiDBLite consensus disorder prediction 248 266 - -
Dod01g0748 300 MobiDBLite consensus disorder prediction 267 284 - -
Dod01g0748 300 Pfam Skp1 family, tetramerisation domain 18 79 IPR016073 GO:0006511
Dod01g0748 300 PANTHER SKP1-LIKE PROTEIN 20 1 266 - -
Dod01g0748 300 SUPERFAMILY Skp1 dimerisation domain-like 89 159 IPR036296 GO:0006511
Dod01g0748 300 MobiDBLite consensus disorder prediction 205 284 - -
Dod01g0748 300 Pfam Skp1 family, dimerisation domain 116 153 IPR016072 GO:0006511
Dod01g0748 300 SUPERFAMILY POZ domain 16 79 IPR011333 -
Dod01g0748 300 SMART skp1_3 15 115 IPR001232 GO:0006511
Dod01g0748 300 Coils Coil 222 248 - -
Dod01g0748 300 Coils Coil 169 189 - -
Dod01g0748 300 Gene3D Potassium Channel Kv1.1; Chain A 12 161 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0748 Dod-Chr1 13429218 13435876 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0748 - - gmx:100809439 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0748 01 13429218 13435876 Dod01g0748 01 13429218 13435876 ECH
Dod07g1954 07 50068632 50074820 Dod01g0748 01 13429218 13435876 ECH
Dod01g0748 01 13429218 13435876 Dod07g1954 07 50068632 50074820 PCT