Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0183 ATGCGGAACTTTGCTTCAAGTTGCATTGTTGGAATTGTGGGTCAGAAAAATGATTCCCCAAGGCCACCTCACTCTGCTTCAGAATGTTCTGATGACGAGACTTCTATTATAAGCAGAGAGGAAGGACTGGAATGCCCAATATGCTGGGAATCTTTTAACATTGTTGAAAATGTGCCTTATGTTTTGTGGTGTGGCCACACCCTGTGTAAAAATTGCATACTGGGACTGCAATGGGCTGCGATGAAATTCCCAACACTTCCAATTCAGCTTCCACTTTTTATCTCCTGCCCATGGTGCAACCTCTTATCTCTCCGTTTAATTTATCGGGGAAATCTGAAATTCCCTCGCAAGAACTACTTTCTTCTTTGGATGGTTGAGAGCATGAATGGTGATAGAGTGAAGTCACATTCATCTTTCTGTGGGGATCATCAACCTGTCTGGCCAATTAAAGACAATTTAGCCGTGGGAAGCCAAGTAAGCCATGGAAACCTTCAGAGGGGACAAGTTCGCCGTCCAGAATCATTGAGTTCCAGTCAATATCATGGCAGTAATGGTAATTACCTCAGCATGGAAAGACTGCATACATCACTTCGGAAGTCCTTGGTTTTATTTGTTCACTTGACAGCAAAGTTCCCATTGATCATTATATTTCTTTTGATTGTCTTATATGCAATACCAGCCAGTGCAGCCATTTTGGCTTTGTATATACTCATTACCATTGTGTTTGCTGTCCCATCATTTCTCATCTTGTACTTTGCATATCCCAGTTTGGATTGGCTTGTCAGGGAAATTATCACTTGA 801 0.4195 MRNFASSCIVGIVGQKNDSPRPPHSASECSDDETSIISREEGLECPICWESFNIVENVPYVLWCGHTLCKNCILGLQWAAMKFPTLPIQLPLFISCPWCNLLSLRLIYRGNLKFPRKNYFLLWMVESMNGDRVKSHSSFCGDHQPVWPIKDNLAVGSQVSHGNLQRGQVRRPESLSSSQYHGSNGNYLSMERLHTSLRKSLVLFVHLTAKFPLIIIFLLIVLYAIPASAAILALYILITIVFAVPSFLILYFAYPSLDWLVREIIT* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0183 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 137 IPR013083 -
Dod01g0183 266 ProSitePatterns Zinc finger RING-type signature. 64 73 IPR017907 -
Dod01g0183 266 ProSiteProfiles Zinc finger RING-type profile. 45 100 IPR001841 -
Dod01g0183 266 PANTHER UBIQUITIN-PROTEIN LIGASE 1 266 - -
Dod01g0183 266 PANTHER LIGASE, PUTATIVE-RELATED 1 266 - -
Dod01g0183 266 Pfam RING-type zinc-finger 45 78 IPR027370 -
Dod01g0183 266 SUPERFAMILY RING/U-box 39 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0183 Dod-Chr1 3100310 3103571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0183 1 266 Miscellaneous Gene Families AT3G29270 61.624 5.87e-113 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0183 - - gmx:100799346 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g2435 02 53631354 53632145 Dod01g0183 01 3100310 3103571 PCT