Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0613 ATGAAGGCAACACTAAGGTACTTAGCAGGAATTGCAGGCCCAAGTGGTTTTGGTTCCAATTCCACGGCTGAGCAAGTTACTCAACATTGTTCTTCCATGCTTCTTTCTAATCTCACCGCTCTCATAACTGGGGCGTCATCTGGACTTGGAGCTGAAACAGCTAGAGTGTTAGCGAAGAGAGGAGTAAGAGTTGTGATTGCTGCGAGGGACATGGAGAAGGCAAGGGAAGTGAGAGAGAATATCCTGAAAGAGAGTCCATATGCTGAGGTTTTATTGCTGGAGATTGATCTAAGCTCTTTTGCTTCCGTCCAGAGATTTTGTTCTGAGTTTTTGGCTCTGCAAATTCCGCTCAATATTCTCATAAACAATGCCGGGATTTTCTCTCAGAACTTGGAGTTCTCCGAAGACAAAATTGAGATGACATTTGCTACAAATTACCTAGGACATTTTTTGTTAACGGAGATGCTGTTAGAGAAACTGATAGAAACGGCAGAGAAGACGGGCATTCAAGGAAGAATAATAAACGTGTCTTCAATGATCCATAGTTGGGTGAAAAGAGAAGCTTTTGGATTCAAGGACATGCTCAATGGAGACAACTATAACGGCACACGTGCATATGCTCAATCAAAATTGGCCAGTATTTTGCACGCCAAGGAAATGGCCAAACAGCTCAAGGCAAGAAATGCGAGAGTAACTATCAATGTGGTCCATCCGGGTATTGTGAAGACAGGAATTATGAGAGCTCATAAGAGTCTAATAACAGATTCCTTGTTTTTCATCGCATCCAAGTTACTCAAATCGGTTTCTCAGGGTGCAGCAACGGCATGTTATGTAGCATTGAGTCCACAAACAGATGGAATGAGTGGGAAATACTTTTTAGACTGCAATGAGAGTAGCTGCTCCAGTTTAGCTAATGACGAAGCTGAAGCTCAAAAGCTATGGAACAATACTCATGTCCTGCTTCACAAACGACTACGTCAAGCTGCAATTTGA 993 0.427 MKATLRYLAGIAGPSGFGSNSTAEQVTQHCSSMLLSNLTALITGASSGLGAETARVLAKRGVRVVIAARDMEKAREVRENILKESPYAEVLLLEIDLSSFASVQRFCSEFLALQIPLNILINNAGIFSQNLEFSEDKIEMTFATNYLGHFLLTEMLLEKLIETAEKTGIQGRIINVSSMIHSWVKREAFGFKDMLNGDNYNGTRAYAQSKLASILHAKEMAKQLKARNARVTINVVHPGIVKTGIMRAHKSLITDSLFFIASKLLKSVSQGAATACYVALSPQTDGMSGKYFLDCNESSCSSLANDEAEAQKLWNNTHVLLHKRLRQAAI 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0613 330 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Dere14g0613 330 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Dere14g0613 330 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Dere14g0613 330 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Dere14g0613 330 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Dere14g0613 330 CDD retinol-DH_like_SDR_c_like 39 314 - -
Dere14g0613 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 298 IPR036291 -
Dere14g0613 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Dere14g0613 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Dere14g0613 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Dere14g0613 330 PANTHER RETINOL DEHYDROGENASE 14 319 - -
Dere14g0613 330 Gene3D - 27 326 - -
Dere14g0613 330 Pfam short chain dehydrogenase 39 180 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0613 Dere-ChrDere14 6424368 6427149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0613 35 248 Acyl Lipid Metabolism Gene Families AT3G55290 31.963 2.40e-16 76.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0740 03 11828593 11831918 Dere14g0613 14 6424368 6427149 CCT
Dere14g0613 14 6424368 6427149 Dere14g0613 14 6424368 6427149 ECH