Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0740 ATGCTCTTTCTTTGTGCTCATAAGAGTGTAAAAGCAAGCAAACCCATGAAGGCTACACTGAGATACTTAGCAGGAATAGCTGGACCTAGTGGTTTTGGCTCAAATTCAACAGCTGAGCAAGTCACTGAAGATTGCTCTTGCTTCCTCCCTTCCCATCTTACTGCTCTCATCACAGGTGGGACTTCTGGGATTGGAGCTGAAACTGCTAGAGTGTTGGCGAAGAGAGGAGTGAGAGTGGTGATTGGTGCGAGGGACATGAAGAAGGCGAGGGAAGTGAAACAGAATATCCAGAAAGAGAGTCCAAACGCTGAGGTTATATTGTTGGAGATCGATCTAAGCTCATTTGCTTGTGTACAGAGATTTTGTTCTGAGTTTTTAGCTCTAGAGCTTCCCCTTAATATCCTCATAAACAATGCTGGAATATTCTCTCAGAATTTGGAGTTCTCGGAAGAGAAAATTGAGATGACATTTGGCACAAATTACTTAGGGCATTTTTTGTTGACAGAAATGCTTCTAGAAAAAATGATAGAAACAGCAGAGAAGACTGGAATTGAAGGAAGAATAATAAACGTTTCCTCCGTGATCCATAGCTGGGTGAAGAGAGACTCTTTTCGTTTCCACGACATGCTCAATGGAAGAAATTATAATGGCACACGGGCATATTCTCAATCAAAATTGGCCAATATTTTGCATGCAAAAGAGTTGGCCAGACAGCTAAAGGCAAGGAATGCGAGAGTAACTATCAATGCAGTTCATCCGGGGATTGTGAAGACAGGGATTATCAGAGCTCATAAAGGTTTAATAACAGATTCCCTGTTTTTCATTGCATCCAAGTTGCTCAAATCAACATCTCAGGGTGCAGCAACAACTTGTTATGTTGCTCTGAGTCCACAAACAGAAGGGTTGAGTGGGAAATACTTCGCAGACTGTAATGAGAGTAACTGCTCAAGTCTAGCAAGTGACCAATTTGAAGCTCAAAAGCTATGGAACAACACTCGTGCCTTGCTTCAAAAAAGACTACGTCAAGCCGCCATTTGA 1038 0.422 MLFLCAHKSVKASKPMKATLRYLAGIAGPSGFGSNSTAEQVTEDCSCFLPSHLTALITGGTSGIGAETARVLAKRGVRVVIGARDMKKAREVKQNIQKESPNAEVILLEIDLSSFACVQRFCSEFLALELPLNILINNAGIFSQNLEFSEEKIEMTFGTNYLGHFLLTEMLLEKMIETAEKTGIEGRIINVSSVIHSWVKRDSFRFHDMLNGRNYNGTRAYSQSKLANILHAKELARQLKARNARVTINAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKSTSQGAATTCYVALSPQTEGLSGKYFADCNESNCSSLASDQFEAQKLWNNTRALLQKRLRQAAI 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0740 345 Gene3D - 50 341 - -
Dere03g0740 345 PRINTS Glucose/ribitol dehydrogenase family signature 54 71 IPR002347 -
Dere03g0740 345 PRINTS Glucose/ribitol dehydrogenase family signature 221 240 IPR002347 -
Dere03g0740 345 PRINTS Glucose/ribitol dehydrogenase family signature 244 261 IPR002347 -
Dere03g0740 345 PRINTS Glucose/ribitol dehydrogenase family signature 180 196 IPR002347 -
Dere03g0740 345 PRINTS Glucose/ribitol dehydrogenase family signature 130 141 IPR002347 -
Dere03g0740 345 CDD retinol-DH_like_SDR_c_like 54 329 - -
Dere03g0740 345 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 54 313 IPR036291 -
Dere03g0740 345 PANTHER RETINOL DEHYDROGENASE 29 335 - -
Dere03g0740 345 Pfam short chain dehydrogenase 54 195 IPR002347 -
Dere03g0740 345 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 194 IPR002347 -
Dere03g0740 345 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 141 IPR002347 -
Dere03g0740 345 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 221 240 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0740 Dere-ChrDere03 11828593 11831918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0740 54 263 Acyl Lipid Metabolism Gene Families AT3G55310 30.876 5.43e-13 66.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0740 03 11828593 11831918 Dere14g0613 14 6424368 6427149 CCT
Dere03g0740 03 11828593 11831918 Dere03g0740 03 11828593 11831918 ECH