Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0565 ATGTTCAATGCTGCCTTTGAATCCCTTTCCTCAGATTCGTCCAGTCATGACTCACCTAAGGAACGATCTGGGAATATGTATTTTTCAGATCTTGAGGTGCAGCAAAATGACAGAGAACAAGATGGGAAAGAACCTGATCAGAGGCAACAAAATATGACAGAAGATATTTCTCATAACGGACGGAATTCTAATTATGCAGGCACATCTCATAATCTCAATGATGCATCTGAAGATCCTACTTTTCCTAACTCTGATTATGGAGGACACTGCTCTTTTGTGCTCATTTCCATGGTTGATTACTCAGGGAGATCCCCTGATTACCTTGTGATTATTCTGGATATTAGCTGTTTGATATTGGTTCTCCCTGGCAACTTGGTTCCTGAAGAAGTAAAGATGCCGGGAATTGTTACAAATGGATTTCATCATGAAGAGAGAGCAAATGAAATGAATGGGAACCCTTCCGCTTGTAAGGAAACCACAACTCCAATCAAGCCCCAAAGGAGTTCCTCGAGTCTGCCAAGCCCTCAGAATGCAGGTCCAAATTTACCTGTTGATGGAGTACCGGTTGATACCTCAATTGAGCAGCTTTATGAAAATGTCTATGACATGCAAAGTTCTGATCACTCATCATCAACCCAAAGTCTTGGATCTGATGGTGAGGAGTCTAGGATTGATTCAGAATTGTGCCATCTAGTTGGGGGACCGATGAGGGAGGTGGAAATAATGGCAGGGGGAGTAGAGGAGAAGTCAAGAGGTGATTCCAGTAGTGAAACATCTTCTAGAAAAGGTACATCAGCGAATGGTAAGAAGTTGATACAGGCAGATGAGAAGGTTCAATCTGCAAGTACAAGTTCTGTTTCTTCTGAAAAATCGAACAAAGCATCAAACTCACAGGTGGACCGTGTCCCTGAAACACCATCACAGTCAAAACCCAAGGGCAGAAGTCCTCCTGCAAAGGCTCCTACTGATAGGAGGGCTGATAAACCTTTGAGAAAACAAAGGACTAGAGTTACTCGGGCAAAAAAATCAAAGAATTCTCCTATTGGAAGGTTAGTGTCACAAAGTCAGGGTGAGAATTCAACTGAATCAACATCAGACAAGCCAGAGCTGGGGTCAGTTTTACTAAAGCGAGCAAGAGATTTGATTTCATCAGGAAATAATCCACAGAAGGCTCTTGAATTAGCTCTTCAAGCGAAGAAATTATTTGAGAAGTATGCTGATGGAAAACCATGTTTGGAATTGGTCATGTGCCTACACGTTACTGCAGCAATATATTGCAGCATGGGCCAATACCACGAGGCAATTCCAATTCTTGAGCACTCCATTGAGATTCCTGTCATTGAGGAAGGGCAAGATCGTGCCCTTGCTAAATTTGCTGGTCACATGCAATTAGGTGATACCTATGCAATGCTGGGCCAGCTTGAAAATTCAATTATGTGCTACACCACAGGGTTGGAAGTCCAGAGGCAGGTTTTGGGAGAAACAGACCCAAGAGTTGGCGAAACTTGTAGGTATGTGGCTGAGGCACATGTACAAGCGTTGCAATTTGATGAAGCCGAGAAGCTCTGCCAAATGGCTCTTGACATTCATAGAGAAAATGGTTCACCTCCTTCTCTTGAAGAGGCAGCTGATAGGAGGCTTATGGGTCTTATATGTGAAGCAAAGGGAAACCATGAAGAAGCTCTTGAGCATCTTGTTTTAGCCAGCATGGCAATGGTAGCAAATGGCCAGGAAGCCGAAGTGGCATCTGTTGACAGCAGCATTGGTGACACATACTTATCATTGTCTCGGTACGATGAAGCTATTTTTGCTTATCAGAAAGCACTCACAGTTTTCAAGACCAGCAAAGGAGAGAATCATCCAGCTGTGGGATCAATTTTTGTACGTCTGGCTGACTTGTATAACAGGACTGGGAAGATAAGGGAATCAAAATCTTATTGTGAAAGTGCACTAAGAATCTATGAGAAGCCTATGCCTGGGGTCCCTCCTGAGGAGATTGCAAGTGGTCTTATGGATGTTTCAGCTATCTATGAGTCAATGAAAGAGCTTGAACAGGCACTCAAGTTACTGTGCAAGGCATTGGAGATATACAAGGATGCCCCTGGTCAGCAAAGCACAATAGCAGGAATCGAAGCTCAGATGGGGGTCATGCACTACATTTTGGGCAACTATACTGAATCTTACAACACTCTGAAGAATGCTATCTCAAAGCTTCGTGCTACGGGAGAGAAGAAATCAGCCTTCTTTGCTGTTGCTCTTAATCAAATGGGACTTGCTTGTGTGCAGCGGTATGCATTGGGCGAGGCTACGGAACTGTTTGAAGAAGCAAAGAACATATTGGAACAAGAGTATGGACCATATCATCCTGAAACGCTTGGGGTGTATAGCAATCTTGCTGGCACCTATGATGCAATTGGCAGGGTGGATGAGGCAATTCAAATTCTGGAGTATGTAGTTGGTATGAGGGAGGAAAAACTAGGGACAGCGAATCCTGATGTGGATGATGAGAAGAGAAGGTTGGGTGAATTGTTGAAGGAAGCAGGCAAAGTTCGGAGCAGAACAGCCAGGTCACTTGAGAAGCTTCTTGAAGCCAATGCTCCTTCTGAAAACAATAACCTTGTCATCAACGTTTGA 2634 0.4377 MFNAAFESLSSDSSSHDSPKERSGNMYFSDLEVQQNDREQDGKEPDQRQQNMTEDISHNGRNSNYAGTSHNLNDASEDPTFPNSDYGGHCSFVLISMVDYSGRSPDYLVIILDISCLILVLPGNLVPEEVKMPGIVTNGFHHEERANEMNGNPSACKETTTPIKPQRSSSSLPSPQNAGPNLPVDGVPVDTSIEQLYENVYDMQSSDHSSSTQSLGSDGEESRIDSELCHLVGGPMREVEIMAGGVEEKSRGDSSSETSSRKGTSANGKKLIQADEKVQSASTSSVSSEKSNKASNSQVDRVPETPSQSKPKGRSPPAKAPTDRRADKPLRKQRTRVTRAKKSKNSPIGRLVSQSQGENSTESTSDKPELGSVLLKRARDLISSGNNPQKALELALQAKKLFEKYADGKPCLELVMCLHVTAAIYCSMGQYHEAIPILEHSIEIPVIEEGQDRALAKFAGHMQLGDTYAMLGQLENSIMCYTTGLEVQRQVLGETDPRVGETCRYVAEAHVQALQFDEAEKLCQMALDIHRENGSPPSLEEAADRRLMGLICEAKGNHEEALEHLVLASMAMVANGQEAEVASVDSSIGDTYLSLSRYDEAIFAYQKALTVFKTSKGENHPAVGSIFVRLADLYNRTGKIRESKSYCESALRIYEKPMPGVPPEEIASGLMDVSAIYESMKELEQALKLLCKALEIYKDAPGQQSTIAGIEAQMGVMHYILGNYTESYNTLKNAISKLRATGEKKSAFFAVALNQMGLACVQRYALGEATELFEEAKNILEQEYGPYHPETLGVYSNLAGTYDAIGRVDEAIQILEYVVGMREEKLGTANPDVDDEKRRLGELLKEAGKVRSRTARSLEKLLEANAPSENNNLVINV 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0565 877 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 175 865 - -
Dere14g0565 877 Gene3D Tetratricopeptide repeat domain 352 568 IPR011990 GO:0005515
Dere14g0565 877 SMART tpr_5 500 533 IPR019734 GO:0005515
Dere14g0565 877 SMART tpr_5 582 615 IPR019734 GO:0005515
Dere14g0565 877 SMART tpr_5 750 783 IPR019734 GO:0005515
Dere14g0565 877 SMART tpr_5 708 741 IPR019734 GO:0005515
Dere14g0565 877 SMART tpr_5 458 491 IPR019734 GO:0005515
Dere14g0565 877 SMART tpr_5 624 657 IPR019734 GO:0005515
Dere14g0565 877 SMART tpr_5 792 825 IPR019734 GO:0005515
Dere14g0565 877 SMART tpr_5 667 700 IPR019734 GO:0005515
Dere14g0565 877 SMART tpr_5 542 575 IPR019734 GO:0005515
Dere14g0565 877 SMART tpr_5 415 448 IPR019734 GO:0005515
Dere14g0565 877 MobiDBLite consensus disorder prediction 145 188 - -
Dere14g0565 877 Coils Coil 680 700 - -
Dere14g0565 877 MobiDBLite consensus disorder prediction 347 368 - -
Dere14g0565 877 MobiDBLite consensus disorder prediction 52 80 - -
Dere14g0565 877 MobiDBLite consensus disorder prediction 34 51 - -
Dere14g0565 877 Pfam Tetratricopeptide repeat 581 656 - -
Dere14g0565 877 Pfam Tetratricopeptide repeat 750 818 - -
Dere14g0565 877 SUPERFAMILY TPR-like 707 849 IPR011990 GO:0005515
Dere14g0565 877 Gene3D Tetratricopeptide repeat domain 740 865 IPR011990 GO:0005515
Dere14g0565 877 Gene3D Tetratricopeptide repeat domain 569 739 IPR011990 GO:0005515
Dere14g0565 877 SUPERFAMILY TPR-like 373 490 IPR011990 GO:0005515
Dere14g0565 877 SUPERFAMILY TPR-like 501 658 IPR011990 GO:0005515
Dere14g0565 877 MobiDBLite consensus disorder prediction 152 178 - -
Dere14g0565 877 MobiDBLite consensus disorder prediction 276 312 - -
Dere14g0565 877 Pfam MalT-like TPR region 386 572 IPR041617 -
Dere14g0565 877 ProSiteProfiles TPR repeat profile. 582 615 IPR019734 GO:0005515
Dere14g0565 877 MobiDBLite consensus disorder prediction 1 80 - -
Dere14g0565 877 MobiDBLite consensus disorder prediction 203 219 - -
Dere14g0565 877 MobiDBLite consensus disorder prediction 245 371 - -
Dere14g0565 877 MobiDBLite consensus disorder prediction 203 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0565 Dere-ChrDere14 5754817 5764960 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0791 03 12462740 12465406 Dere14g0565 14 5754817 5764960 CCT
Dere03g0791 03 12462740 12465406 Dere14g0565 14 5754817 5764960 ECH
Dere14g0565 14 5754817 5764960 Dere14g0565 14 5754817 5764960 ECH