Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0531 ATGGAACATCACCAGTCTTACAGTGTCTCTTCTTCTTCCTCTTCCTCAAACCACCTTCAAACAGGGCTAAAGTCTCTGTCTTCACAACGCAGCCTCGCATCAATCCCTTCCCTTAACTCCAAATCTCATCGCCAGCTAGAAAACCATCCTTCCACCACCTACTACCAGTGCCTCACAATTCTCAAAGGCCACACTTCCTACATATCCTCTATTACCGTCTCTGGGAAGTTCCTCTACACAGGTTCATCTGACAGGGAAATCAGATCATGGAATCACACCCTTTTCCCCTCTGAATTAGACCCTCAAGATTCCATCACCAACGTAGCAGTTTCAGGAAAGGGTGCAGTGAAATCCATAGTAGTTCAATCTGATAAACTTTTCAGTGCTCACCAAGACCACAAAATCCGAGTATGGAAGATCAGCAACCACAAACCCGATCAACAGAAGTACACGTGTCTAGCCACCCTTCCAACGTTGGGTGATCGTGCTTCCAAAATTTTGATCCCCAAGAACCATGTCCAGATCAGAAGGCACAAGAAATGCACGTGGGTTCATCATGTGGACACAGTCTCTGCTCTGGCCTTGTCCAAAGACGAGACCTTGCTGTACTCAGTTTCATGGGATAGGACTATCAAAATCTGGAGAACCAGAGATTTCACCTGTTTAGAATCAGTAAGCAACGCACATGACGATGCCATAAATGCAGTCGCAGTTTCTAATGATGGGTATGTATACACAGGATCAGCAGATAAGAGGATAAATGTGTGGAAGAAAGGGGAGGGAGAAAAGAAGCATTCTTTGGTAGATACTTTAGAGAAACACAATTCTGGGATCAATGCGTTGGCACTGAGCAGTGATGGGTGTGTGTTGTATTCTGGTGCATGTGACAGATCGATATTGGTTTGGGAGAAGGATAAGGAAGAATATGGAAAAATGGTGGTGGTGGGTGCGTTAAGAGGGCATACCATGTCTATATTGTGCTTGGCTGTGGCTTCGGATTTGGTGTGTAGTGGTTCTGCGGACAAAACGATTCGGATTTGGAGAGGGATTGAGAAAGATTACTCGTGTTTAGCAGTTTTGGAAGGGCATAGTGGTGCTGTTAAGTGTATAACTGCGGCGGTTGATCGTTGCGATTCGTCAGAAGCTTCTTTTCTGGTGTATAGTGGCAGTTTGGACCGTGACGTTAAGATGTGGCAAATTGTTATTCCTGTTTTTTAG 1218 0.4507 MEHHQSYSVSSSSSSSNHLQTGLKSLSSQRSLASIPSLNSKSHRQLENHPSTTYYQCLTILKGHTSYISSITVSGKFLYTGSSDREIRSWNHTLFPSELDPQDSITNVAVSGKGAVKSIVVQSDKLFSAHQDHKIRVWKISNHKPDQQKYTCLATLPTLGDRASKILIPKNHVQIRRHKKCTWVHHVDTVSALALSKDETLLYSVSWDRTIKIWRTRDFTCLESVSNAHDDAINAVAVSNDGYVYTGSADKRINVWKKGEGEKKHSLVDTLEKHNSGINALALSSDGCVLYSGACDRSILVWEKDKEEYGKMVVVGALRGHTMSILCLAVASDLVCSGSADKTIRIWRGIEKDYSCLAVLEGHSGAVKCITAAVDRCDSSEASFLVYSGSLDRDVKMWQIVIPVF 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0531 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 318 347 - -
Dere14g0531 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 226 266 IPR001680 GO:0005515
Dere14g0531 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 318 347 IPR001680 GO:0005515
Dere14g0531 405 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 8 400 IPR045182 -
Dere14g0531 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 226 257 - -
Dere14g0531 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 183 214 - -
Dere14g0531 405 CDD WD40 57 399 - -
Dere14g0531 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 183 224 IPR001680 GO:0005515
Dere14g0531 405 FunFam BnaA09g28200D protein 173 261 - -
Dere14g0531 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 91 - -
Dere14g0531 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 303 IPR001680 GO:0005515
Dere14g0531 405 MobiDBLite consensus disorder prediction 1 21 - -
Dere14g0531 405 Gene3D - 307 401 IPR015943 GO:0005515
Dere14g0531 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 91 IPR001680 GO:0005515
Dere14g0531 405 Pfam WD domain, G-beta repeat 355 398 IPR001680 GO:0005515
Dere14g0531 405 Pfam WD domain, G-beta repeat 316 347 IPR001680 GO:0005515
Dere14g0531 405 Pfam WD domain, G-beta repeat 268 302 IPR001680 GO:0005515
Dere14g0531 405 Pfam WD domain, G-beta repeat 184 214 IPR001680 GO:0005515
Dere14g0531 405 Pfam WD domain, G-beta repeat 221 257 IPR001680 GO:0005515
Dere14g0531 405 Pfam WD domain, G-beta repeat 56 91 IPR001680 GO:0005515
Dere14g0531 405 PRINTS G protein beta WD-40 repeat signature 335 349 IPR020472 -
Dere14g0531 405 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Dere14g0531 405 PRINTS G protein beta WD-40 repeat signature 386 400 IPR020472 -
Dere14g0531 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 303 - -
Dere14g0531 405 SMART WD40_4 311 348 IPR001680 GO:0005515
Dere14g0531 405 SMART WD40_4 218 257 IPR001680 GO:0005515
Dere14g0531 405 SMART WD40_4 264 303 IPR001680 GO:0005515
Dere14g0531 405 SMART WD40_4 353 399 IPR001680 GO:0005515
Dere14g0531 405 SMART WD40_4 54 91 IPR001680 GO:0005515
Dere14g0531 405 SMART WD40_4 102 139 IPR001680 GO:0005515
Dere14g0531 405 SMART WD40_4 176 215 IPR001680 GO:0005515
Dere14g0531 405 Gene3D - 165 306 IPR015943 GO:0005515
Dere14g0531 405 SUPERFAMILY WD40 repeat-like 53 400 IPR036322 GO:0005515
Dere14g0531 405 Gene3D - 47 164 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0531 Dere-ChrDere14 5442721 5443938 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0531 180 400 Acyl Lipid Metabolism Gene Families AT3G18860 24.034 7.21e-08 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0831 03 12870217 12871425 Dere14g0531 14 5442721 5443938 CCT
Dere03g0831 03 12870217 12871425 Dere14g0531 14 5442721 5443938 ECH
Dere14g0531 14 5442721 5443938 Dere14g0531 14 5442721 5443938 ECH