Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0831 ATGCAATTCCACCGATCTTATAGTAGCTCTTCGTCTTCTTCCTCTAACCATCCTCAAGCTAGACTAACCTCTCTGTCTTCACAACGCAGCCTCGCTTCGGTTCCTTCTCTTAATTCTCACTCTCACCACCATGCCTCCGCCACCTATCACCAGTGCCTTGCAACTCTCAAAGGCCACACATCCTACATATCCTGTCTAGCCCTTGCAGGGAAATTCCTCTACACTGGATCATCTGACAGAGAAATCAGGTCCTGGAATCATGCCCCTTTTCACTCTGAAATATTCGATCCTGGAGAATCAAATTCAATCACGAGCATGGTAACCGCAGGAAAAGGTGCAGTGAAGTCCCTAATAGTTCAATCTGATAAACTTTTCAGTGCTCACCAAGACTACAAAATCAGAGTATGGAAGATTAGCAACCACGAACTTGACCACCAGAAGTACACCCGTTTAGCCACACTGCCGACGTTTGGTGACAGAGCCTTGAAGGTCTTGAACCCCAAGAACCATATTCAGATTAGAAGGCACAAAAAATGCACCTGGGTTCACCATGTCGATACAGTCTCTGCGCTAGCCTTGTCCAGGGACGAGACCTTGCTCTACTCAGTTTCATGGGACCGGACAATCAAAATCTGGCGGACCAGAGATTTCACCTGTTTAGAATCAGTGAACAACGCACACGACGATGCTATAAATGCACTTGCAGTTTCTGATGATGGTTATGTTTACACTGGATCGGCAGATAAGAAAATTAAGGTATGGAAGAAAGGCCAAGGAGAGAAGAAACATCGCCTGGTTGATACGTTAGAGAAACACAACTCAGGGATCAATGCTTTGGCTCTGAGCAGTGATGGGTCTCTGTTGTATTCTGGTGCTTGTGATAGATCTATATTGGTTTGGGAGAAGGATGAAGAAGATGGCAAAATGATGGTGGTGGGTGCCCTCAGGGGCCACACCAAGTCCATATTGTGCTTAGCCGTGGTCTCGGACTTGGTTTGTAGTGGTTCTGCGGATAAAACGATTAGAATATGGAGAGGTGTTCAAAATGAGTACTCTTGTTTAGCAGTTCTAGAAGGGCATCGGGGTCCGGTTAAGTGCCTGACGGCTGTGATTGATCGTTGCAATCCTTCTGAAGCATCTTTTCTAGTCTATAGTGGCGGTTTAGATTGTGACATTAAGGTGTGGCAGATCTTTGTTCCAGTTCTCTAG 1209 0.4599 MQFHRSYSSSSSSSSNHPQARLTSLSSQRSLASVPSLNSHSHHHASATYHQCLATLKGHTSYISCLALAGKFLYTGSSDREIRSWNHAPFHSEIFDPGESNSITSMVTAGKGAVKSLIVQSDKLFSAHQDYKIRVWKISNHELDHQKYTRLATLPTFGDRALKVLNPKNHIQIRRHKKCTWVHHVDTVSALALSRDETLLYSVSWDRTIKIWRTRDFTCLESVNNAHDDAINALAVSDDGYVYTGSADKKIKVWKKGQGEKKHRLVDTLEKHNSGINALALSSDGSLLYSGACDRSILVWEKDEEDGKMMVVGALRGHTKSILCLAVVSDLVCSGSADKTIRIWRGVQNEYSCLAVLEGHRGPVKCLTAVIDRCNPSEASFLVYSGGLDCDIKVWQIFVPVL 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0831 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 222 IPR001680 GO:0005515
Dere03g0831 402 Gene3D - 12 152 IPR015943 GO:0005515
Dere03g0831 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 224 255 - -
Dere03g0831 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 301 IPR001680 GO:0005515
Dere03g0831 402 CDD WD40 52 396 - -
Dere03g0831 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 56 86 - -
Dere03g0831 402 SUPERFAMILY WD40 repeat-like 45 397 IPR036322 GO:0005515
Dere03g0831 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 212 - -
Dere03g0831 402 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 11 397 IPR045182 -
Dere03g0831 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 315 344 - -
Dere03g0831 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 86 IPR001680 GO:0005515
Dere03g0831 402 SMART WD40_4 174 213 IPR001680 GO:0005515
Dere03g0831 402 SMART WD40_4 49 86 IPR001680 GO:0005515
Dere03g0831 402 SMART WD40_4 308 345 IPR001680 GO:0005515
Dere03g0831 402 SMART WD40_4 262 301 IPR001680 GO:0005515
Dere03g0831 402 SMART WD40_4 216 255 IPR001680 GO:0005515
Dere03g0831 402 SMART WD40_4 100 137 IPR001680 GO:0005515
Dere03g0831 402 SMART WD40_4 350 396 IPR001680 GO:0005515
Dere03g0831 402 Pfam WD domain, G-beta repeat 225 255 IPR001680 GO:0005515
Dere03g0831 402 Pfam WD domain, G-beta repeat 182 212 IPR001680 GO:0005515
Dere03g0831 402 Pfam WD domain, G-beta repeat 313 344 IPR001680 GO:0005515
Dere03g0831 402 Pfam WD domain, G-beta repeat 266 300 IPR001680 GO:0005515
Dere03g0831 402 Pfam WD domain, G-beta repeat 352 395 IPR001680 GO:0005515
Dere03g0831 402 Pfam WD domain, G-beta repeat 51 86 IPR001680 GO:0005515
Dere03g0831 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 344 IPR001680 GO:0005515
Dere03g0831 402 Gene3D - 153 399 IPR015943 GO:0005515
Dere03g0831 402 PRINTS G protein beta WD-40 repeat signature 332 346 IPR020472 -
Dere03g0831 402 PRINTS G protein beta WD-40 repeat signature 242 256 IPR020472 -
Dere03g0831 402 PRINTS G protein beta WD-40 repeat signature 200 214 IPR020472 -
Dere03g0831 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 224 264 IPR001680 GO:0005515
Dere03g0831 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 301 - -
Dere03g0831 402 FunFam BnaA09g28200D protein 171 259 - -
Dere03g0831 402 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0831 Dere-ChrDere03 12870217 12871425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0831 226 397 Miscellaneous Gene Families AT5G08390 27.528 2.24e-09 57.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0831 03 12870217 12871425 Dere14g0531 14 5442721 5443938 CCT
Dere03g0831 03 12870217 12871425 Dere14g0531 14 5442721 5443938 ECH
Dere03g0831 03 12870217 12871425 Dere03g0831 03 12870217 12871425 ECH