Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1211 ATGGCTTCAGACGGCGTCGTTGGGTCCACCGATTTGCCCGTGAAGAGGCAGAGAGAAGATGAGGAAAATGGGGTCTCTGCTTCTAGTATTTCGATGGAGGTGGACTGTAATGGTATATCAGCTGTTATTCCTGGGTGGTTCTCCGAAATTAGCCCAATGTGGCCTGGGGAAGCACACTCTTTGAAGGTTGAAAAGGTCTTGTTTCAAGGGAAGTCTGAATACCAGAATGTCATGGTCTTCCAGTCATCAACATATGGTAAGGTTCTTGTTTTGGATGGAGTAATTCAGCTCACTGAAAGAGATGAATGTGCTTACCAAGAGATGATCACTCATCTTCCTCTTTGCTCTATTCCAAATCCCAAGAAGGTTTTGGTTATTGGTGGAGGAGATGGTGGGGTCTTGCGGGAAGTGTCACGTCATTCTTCAGTTGAGAAGATAGACATTTGTGAAATTGACAAGATGGTAGTCGATGTCTCCAAGCAGTTCTTCCCTGAAGTAGCAGTAGGTTATGAGGATCCACGTGTGACACTTCATATTGGTGATGGAGTTGCATATTTGAAGGCGGTTCCAGAAGGAAGTTATGACGCAGTTATAGTGGACTCATCTGATCCTATAGGCCCTGCTCAAGAGCTTTTTGAAAAGCCCTTTTTTCGGTCAGTAGCAAGGGCTCTTCGTCCTGGAGGAGTTGTGTGTACTCAGGCGGAAAGTATATGGCTTCATATGCATATCATTGAGGATATAGTAGCAAATTGTCGCCAGATATTCAAAGGCTCTGTCAACTATGCTTGGACTACAGTTCCTACATACCCAAGTGGGGTGATTGGCTTTATGCTTTGCTCAACTGAGGGACCTCCTGTTGATTTCAAGCATCCTGTGAATCCTATAGATGACAATGGTCAGAATTCAGTAAGACCATTGAAGTTTTACAACTCTGAGATCCATACAGCATCTTTCTGCTTGCCCTCTTTTGCCAAGAGGGTAATTGAATCGAAAGCTAAGTGA 1002 0.4441 MASDGVVGSTDLPVKRQREDEENGVSASSISMEVDCNGISAVIPGWFSEISPMWPGEAHSLKVEKVLFQGKSEYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPEVAVGYEDPRVTLHIGDGVAYLKAVPEGSYDAVIVDSSDPIGPAQELFEKPFFRSVARALRPGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDDNGQNSVRPLKFYNSEIHTASFCLPSFAKRVIESKAK 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1211 333 Hamap Polyamine aminopropyltransferase [speE]. 45 329 IPR001045 GO:0003824
Dere13g1211 333 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 123 136 IPR030373 -
Dere13g1211 333 PANTHER SPERMIDINE/SPERMINE SYNTHASE 37 331 IPR001045 GO:0003824
Dere13g1211 333 MobiDBLite consensus disorder prediction 1 27 - -
Dere13g1211 333 Pfam Spermidine synthase tetramerisation domain 45 99 IPR035246 -
Dere13g1211 333 NCBIfam spermidine synthase 46 323 IPR001045 GO:0003824
Dere13g1211 333 Gene3D Vaccinia Virus protein VP39 97 333 IPR029063 -
Dere13g1211 333 Gene3D Spermidine synthase, tetramerisation domain 37 96 IPR037163 -
Dere13g1211 333 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 42 329 IPR029063 -
Dere13g1211 333 CDD AdoMet_MTases 122 233 - -
Dere13g1211 333 Pfam Spermine/spermidine synthase domain 102 289 - -
Dere13g1211 333 FunFam Spermidine synthase 1 97 333 - -
Dere13g1211 333 FunFam Spermidine synthase 1 37 96 - -
Dere13g1211 333 PIRSF Spermidine_synth 35 333 IPR030668 GO:0006595
Dere13g1211 333 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 44 281 IPR030374 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1211 Dere-ChrDere13 16834817 16838702 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1579 09 20105734 20109354 Dere13g1211 13 16834817 16838702 CCT
Dere13g1211 13 16834817 16838702 Dere13g1211 13 16834817 16838702 ECH