Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1579 ATGGCCGCAGAGAGCGTGGTTGAGTCCTCCGGTTTGCCGGTGAAGGGGCAGAGGGAAGACGAAGAGAATGGGGTCTCTGCTTCCCCCGTTTCTATGGCGACAGATAAGGATGGAAGCAAGCACCCTGATTTTATGTCGTCTGTGATTCCTGGGTGGTTCTCTGAAATTAGCCCAATGTGGCCTGGGGAGGCACACTCCTTAAAAGTGGAAAAGATCTTATTTAAAGGGAAGTCTGATTACCAGAATGTGATGGTCTTCCAGTCATCAACATATGGAAAGGTTCTTGTTTTGGATGGTGTAATTCAGCTCACTGAAAGAGATGAATGTGCCTACCAGGAAATGATCACACATCTTCCTCTGTGTTCAATTCCAAGTCCCAAAAAGGTTTTGGTTATTGGTGGTGGAGATGGTGGCGTCTTGCGGGAAGTATCACGGCATTCTTCTGTTGAACAGATAGACATTTGTGAAATTGACAAGATGGTAGTTGATGTCTCCAAACAATTTTTCCCTGAAGTAGCAGTAGGCTATGATGATCCACGTGTGAAACTTCATATTGGCGATGGAGTTGAATTTTTGAAAGCTGTACCAGCAGGAACTTATGATGCAATTATAGTTGACTCATCTGACCCTATAGGTCCTGCTCAAGAGCTTTTCGAAAGGCCCTTTTTTGAGTTGGTTGCAAAGGCTCTTCGTCCAGGAGGAGTTGTGAGCACTCAGGCGGAAAGTATATGGCTTCATATGCATATTATTGAGGAAATTGTGGCCAATTGTCGCCAAGTTTTTAAAGGCTCTGTCAACTATGCTTGGACTACAGTTCCTACATACCCTAGTGGGATGATTGGTTTCATGCTTTGCTCAACCGAAGGACCTCCAGTTGATTTCAAGCATCCAGTGAACCCCATTGATGCAAATGATACTCTGAAGTCAGTACCACCGTTGAAGTTTTACAACTCTGAGATTCATACAGCAGCATTTTGTCTTCCATCTTTTGCTAAGAGAACGATTGATACTAAAGCAAAATGA 1023 0.4399 MAAESVVESSGLPVKGQREDEENGVSASPVSMATDKDGSKHPDFMSSVIPGWFSEISPMWPGEAHSLKVEKILFKGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPSPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVVDVSKQFFPEVAVGYDDPRVKLHIGDGVEFLKAVPAGTYDAIIVDSSDPIGPAQELFERPFFELVAKALRPGGVVSTQAESIWLHMHIIEEIVANCRQVFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPPVDFKHPVNPIDANDTLKSVPPLKFYNSEIHTAAFCLPSFAKRTIDTKAK 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1579 340 FunFam Spermidine synthase 1 43 102 - -
Dere09g1579 340 CDD AdoMet_MTases 128 236 - -
Dere09g1579 340 PANTHER SPERMIDINE/SPERMINE SYNTHASE 43 337 IPR001045 GO:0003824
Dere09g1579 340 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 129 142 IPR030373 -
Dere09g1579 340 MobiDBLite consensus disorder prediction 1 41 - -
Dere09g1579 340 Pfam Spermidine synthase tetramerisation domain 51 105 IPR035246 -
Dere09g1579 340 Pfam Spermine/spermidine synthase domain 108 295 - -
Dere09g1579 340 PIRSF Spermidine_synth 40 340 IPR030668 GO:0006595
Dere09g1579 340 Gene3D Spermidine synthase, tetramerisation domain 44 102 IPR037163 -
Dere09g1579 340 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 50 287 IPR030374 -
Dere09g1579 340 NCBIfam spermidine synthase 52 330 IPR001045 GO:0003824
Dere09g1579 340 Gene3D Vaccinia Virus protein VP39 103 340 IPR029063 -
Dere09g1579 340 Hamap Polyamine aminopropyltransferase [speE]. 51 336 IPR001045 GO:0003824
Dere09g1579 340 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 48 336 IPR029063 -
Dere09g1579 340 FunFam Spermidine synthase 1 103 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1579 Dere-ChrDere09 20105734 20109354 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1579 09 20105734 20109354 Dere13g1211 13 16834817 16838702 CCT
Dere09g1579 09 20105734 20109354 Dere09g1579 09 20105734 20109354 ECH