Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0803 ATGGCGAGAAGATCAGCGCCAGTTCTTAAACAACTCGTCAGGAGATCACAATCGTCGGATACTCCGAACATCTTCACTTCATGCTCCAGAATCATTCCCACCCGATCCGTGACTTACATGCCCCGACCCGGAGATGGGGCTCCACGGGCCGTGACGCTGATTCCTGGCGATGGAATCGGACCTCTGGTTACCGGCGCCGTTGAGCAAGTGATGGAAGCGATGCACGCGCCGGTGTACTTCGAGAAGTATGAAGTGCACGGGGACATGAAGAGTGTGCCGCAGGAGGTGATCGATTCGATAAAGAAGAACAAGGTGTGCTTGAAGGGTGGATTGGCTACACCTATGGGCGGTGGTGTGAGCTCGTTGAACGTGCAGCTAAGAAAAGAGCTTGATCTATATGCTTCGCTCGTGAATTGCTTCAATCTTCCTGGGTTACCTACGAGGCACGAGAATGTTGATATTGTCGTGATTAGGGAGAATACGGAGGGAGAGTATTCTGGCCTGGAACATGAGGTCGTTCCGGGAGTCGTTGAAAGCCTGAAGGTAATAACAAAGTTCTGTTCGGAGCGCGTTGCAAAATATGCTTTTGAGTATGCTTACCTAAACAACAGAAAGAAAGTAACTGCTGTGCACAAAGCGAACATTATGAAGCTAGCAGATGGTTTATTCTTGGAATCTTGTCGAGAAGTTGCCACAAAGTATCCTGGCATCAAGTATAATGAAATTATTGTTGATAACTGTTGCATGCAGCTTGTTTCAAAGCCTGAACAGTTTGATGTCATGGTAACTCCGAATCTTTATGGAAATCTAGTTGCAAATACGGCCGCAGGTATTGCTGGAGGCACTGGTGTAATGCCAGGAGGTAATGTTGGAGCTGATCATGCTGTGTTTGAGCAAGGTGCTTCAGCAGGAAATGTTGGTAATGAAAATATAGTGGAACAAAAGAAGGCAAACCCAGTAGCACTGCTTCTCTCTTCGGCCATGATGCTTAGACATCTTCAGTTTCCTGCATTTGCTGACCGATTGGAAACTGCTGTAAAACGAGTCATTCTAGAGGGCAAACACCGGACAAAGGACCTCGGAGGGCACAGCACCACCCAAGAAATTGTTGATGGAGTGTTAAATGCTTTAGATTGA 1137 0.4732 MARRSAPVLKQLVRRSQSSDTPNIFTSCSRIIPTRSVTYMPRPGDGAPRAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFEKYEVHGDMKSVPQEVIDSIKKNKVCLKGGLATPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLPTRHENVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERVAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNENIVEQKKANPVALLLSSAMMLRHLQFPAFADRLETAVKRVILEGKHRTKDLGGHSTTQEIVDGVLNALD 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0803 378 SMART Iso_dh_2 50 373 IPR024084 -
Dere13g0803 378 FunFam Isocitrate dehydrogenase [NAD] regulatory subunit 1 38 377 - -
Dere13g0803 378 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 35 377 - -
Dere13g0803 378 Pfam Isocitrate/isopropylmalate dehydrogenase 51 372 IPR024084 -
Dere13g0803 378 NCBIfam isocitrate dehydrogenase (NAD(+)) 47 376 IPR004434 GO:0006099
Dere13g0803 378 Gene3D Isopropylmalate Dehydrogenase 39 376 - -
Dere13g0803 378 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 50 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0803 Dere-ChrDere13 9933062 9936619 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1160 09 15298014 15301748 Dere13g0803 13 9933062 9936619 CCT
Dere13g0803 13 9933062 9936619 Dere13g0803 13 9933062 9936619 ECH