Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1160 ATGGCGAGAAGATCCTTACCGCTCCTTCAACAATTCTTCGCCAGATCACAGTCATTCGAGGCTCCAACCATCTTTACCTCATGCTCCAGATTCAACCCCAACCGATCCGTCACGTACATGCCTCGGCCCGGCGATGGGACTCCGCGCGCTGTGACCCTTATACCTGGGGATGGCATAGGGCCTTTGGTTACCGGCGCTGTCGAGCAAGTGATGGAGGCCATGCACGCGCCGGTGTACTTCGAAAAATATGAAGTGCGAGGGGACATGAACACAGTGCCGCAGGAGGTGATCGATTCTATAAGGAAGAACAAAGTGTGCTTGAAGGGTGGTTTGGCTACGCCTGTGGGCGGTGGTGTGAGCTCGTTGAACATGCAGCTGAGAAGAAAGCTTGATCTATACGCTTCGCTCGTGAATTGTTTTAATCTTCCTGGATTGCCCACAAGGCATAAGAATGTCGATATTGTCGTGATTAGGGAGAACACTGAGGGCGAGTACGCCGGTTTGGAACACGAGGTCGTTCCTGGCGTCGTCGAAAGCCTTAAGGTAATAACAAAGTTCTGTTCAGAGCGCATTGCTAGATATGCTTTCGAGTATGCTTACCTAAATAACAGAAAGAAGGTGACTGCTGTGCACAAAGCAAATATTATGAAGCTTGCAGATGGTTTGTTTTTGGAATCCTGTCGAGAGGTTGCCACACATTATCCTGGAATCACATATAACGAAATTATTGTGGATAACTGCTGCATGCAACTTGTTTCAAAGCCTGAGCAGTTTGATGTTATGGTAACCCCCAATCTTTATGGAAATCTAGTTGCGAATACAGCAGCAGGTATTGCAGGAGGCACAGGAGTTATGCCTGGAGGTAATGTTGGGGCTGATCATGCTGTGTTTGAGCAAGGTGCTTCGGCAGGAAATGTTGGTAATGAAAAGTTAGTGGAAGAAAAGAAAGCAAACCCAGTGGCACTGCTTCTCTCATCTGCCATGATGCTTAGACATCTGCAGTTTCCTGCATTTGCTGACCGATTGGAGACTGCAGTGAAAGGAGTCATTCAAGAGGGCAAGCACCGCACAAAGGACCTTGGTGGCTCAAGCACCACCCAGGAGATTGTCGATGCAGTAATAGCTGCTTTAGACTGA 1137 0.4846 MARRSLPLLQQFFARSQSFEAPTIFTSCSRFNPNRSVTYMPRPGDGTPRAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFEKYEVRGDMNTVPQEVIDSIRKNKVCLKGGLATPVGGGVSSLNMQLRRKLDLYASLVNCFNLPGLPTRHKNVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIARYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATHYPGITYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNEKLVEEKKANPVALLLSSAMMLRHLQFPAFADRLETAVKGVIQEGKHRTKDLGGSSTTQEIVDAVIAALD 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1160 378 Pfam Isocitrate/isopropylmalate dehydrogenase 51 373 IPR024084 -
Dere09g1160 378 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 40 377 - -
Dere09g1160 378 FunFam Isocitrate dehydrogenase [NAD] regulatory subunit 1 38 377 - -
Dere09g1160 378 SMART Iso_dh_2 50 373 IPR024084 -
Dere09g1160 378 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 49 377 - -
Dere09g1160 378 NCBIfam isocitrate dehydrogenase (NAD(+)) 47 376 IPR004434 GO:0006099
Dere09g1160 378 Gene3D Isopropylmalate Dehydrogenase 38 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1160 Dere-ChrDere09 15298014 15301748 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1160 09 15298014 15301748 Dere13g0803 13 9933062 9936619 CCT
Dere09g1160 09 15298014 15301748 Dere09g1160 09 15298014 15301748 ECH