Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0701 ATGGGTTCTCTCTGTTTTCCTCTGTTTTCTCTGTTTTTGATTGTTTCGGCTAGTGGAGTGCTTTTTCGAGCAGAATCAACGACATACTGGGGAGATATAGAGGGTTTGAAGCAACTCAAGAACGGGCTCGTTAATGGCTCTGTGAATCCTGGTTCGTGTGTGAGTTCTTGGGACTTCTCTGTTGACCCATGCGACAACCTCTTCGGCGAGAAGTTCACGTGCGGCTTCAGATGCGACGTCGTCGTTTCCGGGTGGAGTCGGGTCACAGAACTCACCCTCGACCAGGCGGGTTACGCCGGATCGCTTGCTTCATCATCTTGGAACCTTCCTTATTTAGACACTCTCGATGTCTCAAACAATTACTTTTCCGGTCACATTCCTCAGTCATTATCCAATTTGACTCGTCTTCGCCGACTCGCTTTGTCGGGGAATTTATTCGAGGGTGAGATTCCCGCTTCCATTGGGTCCCTCTTGAACCTCGAAGAACTATACCTCGATCACAATAATCTTCGCGGAACAATCCCATCTAGCTTCAATGGGCTTAAGAGCTTGCAGAGGCTCGAAGTTCAACAGAACAATCTTGACGGTCCTATTCCTGATTTGGGTTCTCTCGAAAACCTTTATTATCTCGATATCTGCGACAATGCCGTCGCCGGGGAATTCCCGGCGTCGTTGCCCAATTCCTTAGTTCAAATTTCAATGAGGAACAATAGTTTAAGTGGAGCTTTAACATCGGAAAGTTTCAGAAATTTAACGTATTTACAGGTTTTGGACTTAAGCTATAACGGACTCGACGGCTCTGTTCCCACTGTTCTTTTCCAGCTTCCTTCACTGCAGCAATTGACTCTCTCGTTCAACAAATTCTCGTCCCTGGAAGCTCCATCTTACAATTTGGGATCTCGAAGTGGGGTCACAGCGGTTGATCTGAGCAACAACGAGATTCAAGGGCTATTGCCTTGGTTCATGGGAGTGATGCCAAAGCTGTCATCTTTATCCTTAGAGAACAACAAATTTACGGGTATGATACCGACCCAGTACGCATTGAAGACGGTTTTTCCAGAATCTGGAACGTCGCCCTTTGAAAGGCTATTGTTGGGTGGGAATTACCTGATTGGAGGTATACCCATTCCTTTACTAGTACTCAAACAGGGTTCTGCAAATGTGAGGCTAGGTTACAACTGCTTGTACAGATGCCCTCTTAGGTTCTTTTTCTGTGAGGAACAAAAATCATCAGACGAGTGTAAGAAGTTTAGCCCCCTCATCCCTTAG 1269 0.4634 MGSLCFPLFSLFLIVSASGVLFRAESTTYWGDIEGLKQLKNGLVNGSVNPGSCVSSWDFSVDPCDNLFGEKFTCGFRCDVVVSGWSRVTELTLDQAGYAGSLASSSWNLPYLDTLDVSNNYFSGHIPQSLSNLTRLRRLALSGNLFEGEIPASIGSLLNLEELYLDHNNLRGTIPSSFNGLKSLQRLEVQQNNLDGPIPDLGSLENLYYLDICDNAVAGEFPASLPNSLVQISMRNNSLSGALTSESFRNLTYLQVLDLSYNGLDGSVPTVLFQLPSLQQLTLSFNKFSSLEAPSYNLGSRSGVTAVDLSNNEIQGLLPWFMGVMPKLSSLSLENNKFTGMIPTQYALKTVFPESGTSPFERLLLGGNYLIGGIPIPLLVLKQGSANVRLGYNCLYRCPLRFFFCEEQKSSDECKKFSPLIP 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0701 422 SUPERFAMILY L domain-like 83 349 - -
Dere13g0701 422 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 12 415 - -
Dere13g0701 422 SMART LRR_typ_2 157 180 IPR003591 -
Dere13g0701 422 SMART LRR_typ_2 251 274 IPR003591 -
Dere13g0701 422 SMART LRR_typ_2 275 298 IPR003591 -
Dere13g0701 422 SMART LRR_typ_2 325 348 IPR003591 -
Dere13g0701 422 SMART LRR_typ_2 133 156 IPR003591 -
Dere13g0701 422 FunFam Nuclear pore complex protein NUP107 30 199 - -
Dere13g0701 422 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 200 291 - -
Dere13g0701 422 Pfam Leucine Rich Repeat 112 133 IPR001611 GO:0005515
Dere13g0701 422 Gene3D Ribonuclease Inhibitor 32 199 IPR032675 -
Dere13g0701 422 Gene3D Ribonuclease Inhibitor 200 418 IPR032675 -
Dere13g0701 422 Pfam Leucine rich repeat 229 288 IPR001611 GO:0005515
Dere13g0701 422 Pfam Leucine rich repeat 159 215 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0701 Dere-ChrDere13 8826401 8827669 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0701 50 383 Receptor kinase-like Gene Family AT1G17750 36.236 9.01e-38 144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0998 09 12897609 12899636 Dere13g0701 13 8826401 8827669 CCT
Dere13g0701 13 8826401 8827669 Dere13g0701 13 8826401 8827669 ECH
Dere13g0701 13 8826401 8827669 Dere09g0998 09 12897609 12899636 ECH