Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0686 ATGGCTCTCAGACTCCGTCAACGTCGTCAATTGCTTCTTGACAAGTGCTATTTTGAGGATTACCTGCTCTTTTACAAGAATTACGTCCGTCCATCTCCCGAGTGGCTCGCTTCCCAGAGTATCAATTTGTGCTTGCTTCATCTGTTGCCCTTTACGTCGTCTCTTGCAAAGCCAGTGGAAGCAACTAATTCTAGCGACACCATGTCTGGAACTTTCTCTCCCAAGTCAGCTCTTGAAAGATCTGATGTTTCTGGGTCTTTTAAGAAGAGAGCCTCAAATAAGTTCAGGAGTTCTTTGTCGAGAAAGGGTAGGAGATCTAGCAAGGTCATGTCCGTTGAAATTGAGGATATCCGTGATGCTGAGGAGTCAGCAGCTGTTGATGCATTTCGTCAAGTTCTTATTCAGGAGGATCTACTCCCTGCCAAGCATGATGATTATCATATGATGTTGAGATTCTTGAAGGCTAGGAAATTTGAAGTTGAGAAAACAAAGCAAATGTGGTCTGACATGCTCCAGTGGAGAAAGGAATTTGGTGCTGACACAATTATGGAGGATTTTGATTTCAAGGAACTCAATGACGTATTACAATATTATCCCCAAGGGCATCATGGAGTAGATAAAGATGGACGACCTGTGTACATTGAGAGATTAGGCCTAGTAGACTCAAACAAGCTGATGCAAGTGACAACCTTGGATCGCTATATCAAGTACCATGTACGGGAGTTTGAGAGGACATTTGAGATAAAGTTGCCAGCATGTTCAATTGCTGCAAAGAAGCATATTGATCAAAGTACAACTATCCTGGATGTGCAAGGAGTGGGGCTTAAGAACTTTAGCAAATCTGCCAGGGAACTTGTCACTCGCCTTCAAAAGGTTGACGGTGACAATTATCCAGAGAGCTTGAATCGCATGTTTATCATCAATGCTGGTTCTGGATTTAGAATGTTGTGGAGCACTGTAAAATCCTTCCTTGATCCTAAGACCACTGCAAAAATTAATGTTCTTGGCAACAAGTACCAGAGCAAATTGCTTGAAATAATTGATGCAAGTGACTTGCCAGATTTTTTAGGAGGTACTTGTACCTGTGCTGATCAAAGAGGTTGTATGCTTTCTGATAAGGGCCCCTGGAAGAATGAAGAAATATTGAGGAAAGTTCTGAATGGTGATCATAAATGTTCAAGAAAAAGTGAGTTTCAGGTGGTGGAAGAGAAGACAGTGTCTGAAGCAATGCCAGTGTCTGAAGCACTGCCAGTGTCTGAGGCAATGCCAGTGCCCGAGGCAATGCCTACCAGCGTCCATGTCAGTCACACAAAATCAGCTCCTGTTTGTGATGAGGTCCCTGCAACTAAAGATTGCAAGTCTGAGGACATAGTCCCAGCTGCTGAAAAAATGGCTTTGAGAAAAGTTGAAGAGAGTGAGATATTAGCAATATCAAAAGCTGGAATAGATTCTTTCATCAATATGGCTGATACATACAAGCTTCATGAGAAATTAAATTACCAGCTTTTCACGGGTGTCATGGCCTTTGTTATGGGTATCCTGACCATGGTCAGGATGACACGAAACATGCCCAAGAAGCTCACCGATGCCAACTTCTACTCCAATCCCACTTTCTCGGCTGAACCAATGTATATAAGGCAGGCCCCTGCTGATGACCCTACACCGTCCATCACTGCTGAAGAGTTTATGACTGTTCTGAAACGCATGACTGAGTTGGAAGAGAAAATGGTCACCATGAATATACCCGCTTACATGCCCCCTGAAAAGGAGGAAATGCTGATTGCTGCTATGAACAGGGCTGATATATTGGAGAAAGAACTAATGGCTACCAAGAAGGCTTTGGAAGATTCACTTGCCCAACAGGAGGAGCTTTTGGCTTATATTGACAAAAAGAAGAAGAAGAAATGGGTACACTACCAAAACCGTAACATTGCTATATGTTTTGATGATGGAGATATTTATTCATGTCTACGGCCTATGATGCGGCATAGAATAGCAGTGGATTGA 2007 0.429 MALRLRQRRQLLLDKCYFEDYLLFYKNYVRPSPEWLASQSINLCLLHLLPFTSSLAKPVEATNSSDTMSGTFSPKSALERSDVSGSFKKRASNKFRSSLSRKGRRSSKVMSVEIEDIRDAEESAAVDAFRQVLIQEDLLPAKHDDYHMMLRFLKARKFEVEKTKQMWSDMLQWRKEFGADTIMEDFDFKELNDVLQYYPQGHHGVDKDGRPVYIERLGLVDSNKLMQVTTLDRYIKYHVREFERTFEIKLPACSIAAKKHIDQSTTILDVQGVGLKNFSKSARELVTRLQKVDGDNYPESLNRMFIINAGSGFRMLWSTVKSFLDPKTTAKINVLGNKYQSKLLEIIDASDLPDFLGGTCTCADQRGCMLSDKGPWKNEEILRKVLNGDHKCSRKSEFQVVEEKTVSEAMPVSEALPVSEAMPVPEAMPTSVHVSHTKSAPVCDEVPATKDCKSEDIVPAAEKMALRKVEESEILAISKAGIDSFINMADTYKLHEKLNYQLFTGVMAFVMGILTMVRMTRNMPKKLTDANFYSNPTFSAEPMYIRQAPADDPTPSITAEEFMTVLKRMTELEEKMVTMNIPAYMPPEKEEMLIAAMNRADILEKELMATKKALEDSLAQQEELLAYIDKKKKKKWVHYQNRNIAICFDDGDIYSCLRPMMRHRIAVD 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0686 668 Gene3D - 178 389 IPR036865 -
Dere13g0686 668 SUPERFAMILY CRAL/TRIO N-terminal domain 119 186 IPR036273 -
Dere13g0686 668 Pfam CRAL/TRIO domain 196 358 IPR001251 -
Dere13g0686 668 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 190 364 IPR001251 -
Dere13g0686 668 SMART sec14_4 190 361 IPR001251 -
Dere13g0686 668 SMART CRAL_TRIO_N_2 145 170 IPR011074 -
Dere13g0686 668 Coils Coil 600 624 - -
Dere13g0686 668 Pfam CRAL/TRIO, N-terminal domain 143 169 IPR011074 -
Dere13g0686 668 Gene3D - 102 177 - -
Dere13g0686 668 SUPERFAMILY CRAL/TRIO domain 191 381 IPR036865 -
Dere13g0686 668 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 80 632 - -
Dere13g0686 668 FunFam SEC14 cytosolic factor 178 390 - -
Dere13g0686 668 CDD SEC14 191 359 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0686 Dere-ChrDere13 8676383 8681729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0686 125 355 Acyl Lipid Metabolism Gene Families AT5G47730 29.583 5.60e-22 95.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g0686 13 8676383 8681729 Dere13g0686 13 8676383 8681729 ECH
Dere06g0184 06 2483795 2490350 Dere13g0686 13 8676383 8681729 ECH