Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0304 ATGGCCGTTCAAGCTCAATACCCATCTAATATCCTCCTTCTAAATAACAGAAACGGACAAGAAAGTTATGAATACGATTATTCTTTGCAACCTCAACCAGGCGGAGGAGGAGGACTCCTTGATCAATCCCACATGCTGTTCAATAATGGAGCAAGTATTAATTCTCGAAAAAGAGGAAGAGAAGCTCCAGCAACAGGAATCACTCAGGCAGCCCCAACCGTTGGGAATTCATTCTCTTTGCAATCCCAAACTCCTCAACTCATAGACCTCTCGCAGCTCCATAACCAGCAACACAATGGCGTTTCCACCGGCCTCCGCCTGTCCTCCTTCGCAGACCACCACCATCAACGTCAAGCAATTCAATTTCACCAGCAACAACCACAAGATAGCTGTCACTCCTCTGCTTTCTTATCTCTGTTTTCCGAAGATTTTGCCTCCCAAATGAAACAACAGAGAGATGAAATCGACCAATTTCTTCAAGCCCAGGAAGAGCAGTTGCGTCGGACACTAGCGGAAAAGAGGCAGAGACATTACCGTGCAATACTAAGCGTAGCGGAAGAAACGGTGGCGCGGCAGTTGAGAGAGAAGGAAGTCGAGGTGGAGAAAGCCACGCGCAGGAACGCCGAGTTAGAGGCACGCGCGGCCCAGCTTAGCGCGGAGGCCCAGGTTTGGCAAGCGAAGGCAAAGGCACAGGAAGCAACGGCTGCTTCTCTGCAAGCCCAACTGCAGCAGGCTATCATGTGCGGCAGCACTGCAGAGAAAAGGGAGGAGGGCGGGCTATCGTGCGCGGTGGGCGCCGAGTGCCAAGCCGAGGACGCCGAGTCGGCGTACGTTGACCCGGACCGGGTCGAAACGGCTGGACCGAAATGCAGAGGGTGTGGGAAGCGAGTGGCTTCGGTGGTGGTATTGCCGTGTCGGCATCTATGCATGTGTACCAAATGCGACGCGCATTTCCGAGTGTGTCCTGTATGCCTCAATCTCAAAAATTCAACCGTTGAGGTTTTTCTCTCTTAG 1014 0.5247 MAVQAQYPSNILLLNNRNGQESYEYDYSLQPQPGGGGGLLDQSHMLFNNGASINSRKRGREAPATGITQAAPTVGNSFSLQSQTPQLIDLSQLHNQQHNGVSTGLRLSSFADHHHQRQAIQFHQQQPQDSCHSSAFLSLFSEDFASQMKQQRDEIDQFLQAQEEQLRRTLAEKRQRHYRAILSVAEETVARQLREKEVEVEKATRRNAELEARAAQLSAEAQVWQAKAKAQEATAASLQAQLQQAIMCGSTAEKREEGGLSCAVGAECQAEDAESAYVDPDRVETAGPKCRGCGKRVASVVVLPCRHLCMCTKCDAHFRVCPVCLNLKNSTVEVFLS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0304 337 PIRSF SBP1_RNase_bind 1 337 IPR017066 -
Dere13g0304 337 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 50 334 IPR017066 -
Dere13g0304 337 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 272 336 - -
Dere13g0304 337 CDD mRING-HC-C3HC5_CGRF1-like 288 324 - -
Dere13g0304 337 Pfam Zinc finger, C3HC4 type (RING finger) 289 324 - -
Dere13g0304 337 Coils Coil 148 168 - -
Dere13g0304 337 Coils Coil 186 241 - -
Dere13g0304 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 337 IPR013083 -
Dere13g0304 337 ProSiteProfiles Zinc finger RING-type profile. 290 324 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0304 Dere-ChrDere13 4218951 4220280 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0484 09 7683365 7684752 Dere13g0304 13 4218951 4220280 CCT
Dere13g0304 13 4218951 4220280 Dere13g0304 13 4218951 4220280 ECH