Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0484 ATGGCCGTTCAAGCTCAATACCCATCTAATGTCCTCCTTTTAAACAGAAACGGACAAGAGGGACATGACTATTCATTACAACCGCGACCAGGAGGGCTCATTGATCAGTCCCATATCTTATTCAATAATGGAGGTACTAATTCTCGCAAGAGAGGAAGAGAGCCTACAGCAGTCACCGGCGTCGGCCAAACAGCCCCGAATGTTGTTAATCCCTTCTCTTTGCAATCCCAGCCCCCTCAGCTCATAGAGCTCTCTCAGCTCCATAACCACCAACCAAATGTGGTCTCCACAGGCCTCGGATTATCCTTCGGTGACAACCAACAACATCCCCACCATCACCATCATCAACAACAAAGACTACAATTACAGCAACAACGCCAACAACAACAACAACAAGGGTGTCAGCCCCATGCTTTCTTATCTCCATTATCTGAAGGATTCACCTCGCAAATCAAACAACAGCGCGATGAAATTGACCAATTCCTTCAAGCCCAGGGAGAGCAATTGCGACGAGCATTAGCAGAGAAGAGACAGAGACATTATCGTGCTTTACTAAGCGCAGCGGAAGAATCAGTGGCCCGGCGATTGAGGGAGAAGGAGGTCGAGGTGGAAAAAGCAGCGCGCAAAAACGCCGAGTTAGAGGCACGCGCGGCGCAACTTAGCGTGGAAGCGCAGCTTTGGCAGGCGAAGGCGAAGGCACAGGAAGCAACCGCCGCTTCTCTGCAAGCGCAACTGCAGCAGGCTATTATGAGCGGAGGTGCACAGGATAAAGGCGGAGCATGTTTCACGGAGGACGGAGGGCTGTCGTGCGCGGTGGGGGGAGAGGGCCAACCGGAGGACGCCGAGTCAGCCTACATTGACCCGGACCGAGTCGTGGTATCGGGACCCAAATGCAAAGGCTGTGGGAAGCGAGTGGCTTCGGTGGTGGTATTGCCGTGTCGGCACCTATGCATCTGCACGGAATGCAACGCGCATTTCCGAGCGTGTCCCGTTTGCCTCACCATCAAAAATTCAACCGTTGAAGTCTATCTCTCCTAG 1038 0.5289 MAVQAQYPSNVLLLNRNGQEGHDYSLQPRPGGLIDQSHILFNNGGTNSRKRGREPTAVTGVGQTAPNVVNPFSLQSQPPQLIELSQLHNHQPNVVSTGLGLSFGDNQQHPHHHHHQQQRLQLQQQRQQQQQQGCQPHAFLSPLSEGFTSQIKQQRDEIDQFLQAQGEQLRRALAEKRQRHYRALLSAAEESVARRLREKEVEVEKAARKNAELEARAAQLSVEAQLWQAKAKAQEATAASLQAQLQQAIMSGGAQDKGGACFTEDGGLSCAVGGEGQPEDAESAYIDPDRVVVSGPKCKGCGKRVASVVVLPCRHLCICTECNAHFRACPVCLTIKNSTVEVYLS 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0484 345 MobiDBLite consensus disorder prediction 93 141 - -
Dere09g0484 345 Pfam Zinc finger, C3HC4 type (RING finger) 297 333 - -
Dere09g0484 345 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 43 342 IPR017066 -
Dere09g0484 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 345 IPR013083 -
Dere09g0484 345 Coils Coil 112 132 - -
Dere09g0484 345 MobiDBLite consensus disorder prediction 43 74 - -
Dere09g0484 345 PIRSF SBP1_RNase_bind 1 117 IPR017066 -
Dere09g0484 345 PIRSF SBP1_RNase_bind 106 345 IPR017066 -
Dere09g0484 345 ProSiteProfiles Zinc finger RING-type profile. 298 332 IPR001841 -
Dere09g0484 345 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 280 344 - -
Dere09g0484 345 Coils Coil 189 244 - -
Dere09g0484 345 MobiDBLite consensus disorder prediction 120 141 - -
Dere09g0484 345 CDD mRING-HC-C3HC5_CGRF1-like 296 332 - -
Dere09g0484 345 MobiDBLite consensus disorder prediction 60 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0484 Dere-ChrDere09 7683365 7684752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0484 298 334 Miscellaneous Gene Families AT2G21380 40.541 3.34e-06 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0484 09 7683365 7684752 Dere13g0304 13 4218951 4220280 CCT
Dere09g0484 09 7683365 7684752 Dere09g0484 09 7683365 7684752 ECH