Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1629 ATGCAGTCCAACCCACCATATGGCTCCTCCTCGGAATGCTGGTTGGACGACGCCTGTATTCTCGACATCGACTTCTTCGTCAAAACTCTCTCAGGCATTAAATCAAAAGGCGTCTGTGCAGACCTAATCGGCTCCATCATCACTCATTACGCCTCCAAATGGCTCCCAGACCTCTCCTCAAACGACGCCGCCCAACGCAGTCTCACCCAATTCCAAGAATCTCCCGAAAGCGTCACCGTTTCGTGGATGAAGAAGCGCTTCTTCGTCGAAACCCTGGTGGGCGTTCTGCCTCCCGAGAAAAACTCAATTCCCTGCAATTTCCTGCTTCGCCTTCTCAGAACGGCCAGCATGGTGGGTGTTGAACCCTCATACAGATCAGAGCTCGAGAAGCGGATTTCATGGCAGCTAGATGAGGCGTCGCTGAAGGAGCTGATGATTCCTTCTTTCAGTCACACTTGTGGGACATTGTTGGATGTGGAGCTTGTAATTAAGTTGGTGAAGAGGTTCGTGAGTCTGGAGAACGAAGGTGTCAAGAGTGGTGCTACTTTAGTGAAGGTGGCGAAGTTAGTGGATTGTTACCTCGCTGAGGCCGCCATTGATGCCAATTTGAGCTTGTCTGAGTTCGTTGCGCTTGCCGGTGCTCTTCCTTCCCATGCAAGAGCTACAGATGACGGGTTGTACAGAGCCATTGACACTTACCTAAAAGCACATCCAGGATTGTCGAAGCAAGAAAGGAAGGGTCTGTGCAGGCTGATAGATAGCCGAAAGCTCACACTGGAGGCCTCACTTCATGCAGCTCAAAACGAACGCTTGCCTGTTCGAGCAGTGATCCAGGTGCTCCTCTCTGAGCAAACCAAACTCCACCGCCACGTAGACTGGACCGCCTCCTTCAGCGGCTCACGCAGCCCCATCGCTGGCGGGTTGGAGCAGCCGGCACGATGTCTTTCGAAGCGTGAAATGAACGCTCAACAAATGCAGATAAAGAAGCTGAAAGAAGAGGTTGTGAGGCTGCAAAGCCAGTGCAACGCCATGCAAGTGCAGATGGAAAGGATGACGGAGAAGAAGAAGGGAATCTTCAGGTGGAAGAAGCTTGGGATCATGCCTGGCTTAAGTAAAAGTGTGACGGTGGTTGAGAAGAATGAAGTTGATGGAGTTGAAGAGGAAGGTGGGTTTGGGAGACAAACACCTATAGACATGAAGACAAGGCTGGTCAAAGGTAGAAGTCATCACAAATGGAGGAGATCCATGTCTTGA 1254 0.5112 MQSNPPYGSSSECWLDDACILDIDFFVKTLSGIKSKGVCADLIGSIITHYASKWLPDLSSNDAAQRSLTQFQESPESVTVSWMKKRFFVETLVGVLPPEKNSIPCNFLLRLLRTASMVGVEPSYRSELEKRISWQLDEASLKELMIPSFSHTCGTLLDVELVIKLVKRFVSLENEGVKSGATLVKVAKLVDCYLAEAAIDANLSLSEFVALAGALPSHARATDDGLYRAIDTYLKAHPGLSKQERKGLCRLIDSRKLTLEASLHAAQNERLPVRAVIQVLLSEQTKLHRHVDWTASFSGSRSPIAGGLEQPARCLSKREMNAQQMQIKKLKEEVVRLQSQCNAMQVQMERMTEKKKGIFRWKKLGIMPGLSKSVTVVEKNEVDGVEEEGGFGRQTPIDMKTRLVKGRSHHKWRRSMS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1629 417 Coils Coil 320 354 - -
Dere12g1629 417 PANTHER OS12G0117600 PROTEIN 12 360 IPR043454 -
Dere12g1629 417 ProSiteProfiles NPH3 domain profile. 12 286 IPR027356 -
Dere12g1629 417 Pfam NPH3 family 13 262 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1629 Dere-ChrDere12 28777414 28779788 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1629 9 309 EF-hand Containing Proteins AT3G44820 35.366 5.48e-53 185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1629 12 28777414 28779788 Dere11g1731 11 31093936 31099606 CCT
Dere12g1629 12 28777414 28779788 Dere12g1629 12 28777414 28779788 ECH