Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1611 ATGGGTGCTTCTCTGCCCCCTAAGGAGGCCAACCTCTTCAAGCTTATTGTTAAATCATATGAAACCAAACAATACAAAAAGGGACTTAAAGCCGCTGATGCCATTTTGAGAAAATTTCCTGACCATGGAGAAACTTTATCAATGAAGGGTTTGACTTTAAATTGCATGGATCGTAAGTCTGAAGCATATGAGCTCGTTCGTCTGGGACTAAAGAATGACCTTAAAAGTCATGTTTGTTGGCATGTTTATGGTCTGCTTTATCGGTCAGATAGAGAATACAGGGAGGCAATTAAGTGCTACCGAAATGCACTGAAAATAGATCCTGACAATATTGAAATTCTACGTGATCTGTCACTCTTACAGGCTCAAATGCGAGATTTAAGTGGCTTTGTTGAGACAAGACAACAACTTCTTACTCTCAAGCCAAATCATCGCATGAACTGGATTGGCTTTGCTGTTGCGCATGATTTGAACTCTAATGCAACCAAAGCAGTTGAAATTCTGGAAGCATACGAAGGGACATTAGAAGATGATTATCCTCCAGAGAATGAACGTTGTGAGCATGGGGAAATGCTTTTATACAAGATCTCCTTGTTAGAGAAATGTGGATTGCTTGAGAGAGCTATCGAGGAGTTGCACAAGAAAGAACCAAAAATTGTTGATAGGCTTGCATATAAAGAACAAGAGGTGTCTCTTTTACTGAAGCTTGGTCACTTAGAAGAAGCTGAAAAGTTGTACCGGGCCATACTTTCTATGAATCCTGACAATTATAGATACTATGAAGGCCTCCAAAAATGTGTTGGGTTATATTCAGAAAGTGGCAATTACTCTCCTGATGAGATAGATCAGTTAGATGAGTTGTACGAATCACTTCAGCAGCAATATAAGTGGTCTTCTGCTGTTAAGAGAATACCGCTTGATTTTCTTCAAGGTGAAAAATTTCAAGAAGCAGCAGATAATTATATTAGGCCTCTCCTAACTAAGGGAGTTCCATCTCTGTTCTCTGATCTTTCTCCTTTGTACAATCACCCTGGGAAGGTGGACATTTTGGAACAACTTATTCTGGAGTTAGAGCGTTCAATTAGGGCAACTGGTCAATACCCTGGGAGGGTGGAACAAGAGCCCCCTTCAACTCTCATGTGGATTTTGTTTTTATTGGCTCAGCATTATGACAGGCGGGGCCAATATGAAATTGCTCTTTCAAAAATCAACGAGGCCATAGAACATACACCTACTGTTATTGATCTATATTCTGTCAAGAGCCGGATACTGAAGCATGCTGGTGATTTGGCTGCTGCTGCTGCATTTTCAGATGAAGCTAGGTGTATGGATCTTGCTGATCGCTATATCAACAGTGAATGTGTTAAGCGCATGCTGCAGGCTGACCAGGTGGCTTTGGCTGAAAAAACTGCTGTTTTGTTCACAAAGGATGGGGATCAACACAACAATCTCCATGACATGCAGTGCATGTGGTATGAGCTTGCATCGGGTGAAAGTTATTTCCGCCAAGGAGATCTTGGACGGGCTCTTAAGAAATTTTTGGCAGTGGAGAAGCATTATGCTGATATTACTGAAGACCAATTTGATTTCCATTCATACTGCTTAAGGAAAATGACTTTGCGTACCTATGTGGAAATGCTCACATTTCAAGATCAACTGCACTCACATGTATATTTTCATAAAGCAGCAGCTGGAGCTATTAGATGTTATATAAAATTGTATGATTCTCCTTCAAAGTCTACAGTTGAGGAGGATGATGATATGTCCAAGTTGCTTCCTTCTCAGAAAAAGAAATTGAGGCAAAAACAGAGAAAGGCTGAAGCACGAGCTAAGAAAGAGGCAGAAGAGAAGATTGAAGAGTCAAGCACCAGTGGTGTATCAAAGTCTGGAAAGCGGCATGTAAAACCTGTTGATCCAGATCCGCGTGGTGAAAAGTTGTTGCAGGTTGAAGATCCACTGTTGGAAGCCACAAAATACTTGAAGTTGCTGCAGAAAAACTCAGCTGATTTATTGGAGACACACTTGCTCGCATTTGAATTATATATGAGAAAGCATAAGATTTTGCTTGCCTTCCAGGCTGTGAAGCAGTTGCTGAGATTGGATGCCGAACACCCTGATTCTCATCGTTGTTTGATTAAATTCTTCCACAAAGTGGGGTCCATGAATGTACCTGTGACTGACAGTGAGAAACTCATATGGAGTGTTTTAGAAGCTGAGCGCCCAACTATTAGTCAACTACATGAGAAATCTCTGTTCGAGGCAAACAACTCTTTCCTTGAAAAACATAAAGATTCTTTGGTGCATAGAGCTGCTTTTGCGGAAATGTTGTACATTTTGGATCCCAATAGAAAGTCAGAGGCTGTAAAGTTGATTGAAGAGTCAACCAATAACCTTGCACCGAGCAATGGAGCACTGGGACCAGTCAAGGAATGGAAACTTAAAGACTGTGTTGCAGTTCACAAACTTCTTGGAACGGTCCTTGTTGAGCAGGATGCTGCATTGAGATGGAAAGCACGTTGTGCAGAGTATTTTCCCTATTCTACATATTTTGGGGGCAGCCGCAGCTCTGCCTCTCCCAACTCAGTCTTGAATCAGATATATAAGAACTCTGAAAACGGGAATCCTAACCATTCAGTGGGTGCTCAAAATGCAGACTCCATCACATCAAATGGGAAATTAGAGGCATTTAAAAAATTCTCTATTTGA 2706 0.4117 MGASLPPKEANLFKLIVKSYETKQYKKGLKAADAILRKFPDHGETLSMKGLTLNCMDRKSEAYELVRLGLKNDLKSHVCWHVYGLLYRSDREYREAIKCYRNALKIDPDNIEILRDLSLLQAQMRDLSGFVETRQQLLTLKPNHRMNWIGFAVAHDLNSNATKAVEILEAYEGTLEDDYPPENERCEHGEMLLYKISLLEKCGLLERAIEELHKKEPKIVDRLAYKEQEVSLLLKLGHLEEAEKLYRAILSMNPDNYRYYEGLQKCVGLYSESGNYSPDEIDQLDELYESLQQQYKWSSAVKRIPLDFLQGEKFQEAADNYIRPLLTKGVPSLFSDLSPLYNHPGKVDILEQLILELERSIRATGQYPGRVEQEPPSTLMWILFLLAQHYDRRGQYEIALSKINEAIEHTPTVIDLYSVKSRILKHAGDLAAAAAFSDEARCMDLADRYINSECVKRMLQADQVALAEKTAVLFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRTYVEMLTFQDQLHSHVYFHKAAAGAIRCYIKLYDSPSKSTVEEDDDMSKLLPSQKKKLRQKQRKAEARAKKEAEEKIEESSTSGVSKSGKRHVKPVDPDPRGEKLLQVEDPLLEATKYLKLLQKNSADLLETHLLAFELYMRKHKILLAFQAVKQLLRLDAEHPDSHRCLIKFFHKVGSMNVPVTDSEKLIWSVLEAERPTISQLHEKSLFEANNSFLEKHKDSLVHRAAFAEMLYILDPNRKSEAVKLIEESTNNLAPSNGALGPVKEWKLKDCVAVHKLLGTVLVEQDAALRWKARCAEYFPYSTYFGGSRSSASPNSVLNQIYKNSENGNPNHSVGAQNADSITSNGKLEAFKKFSI 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1611 901 MobiDBLite consensus disorder prediction 866 885 - -
Dere12g1611 901 PIRSF NAT_A 1 818 IPR021183 -
Dere12g1611 901 FunFam N-terminal acetyltransferase catalytic subunit (NAT1) 505 725 - -
Dere12g1611 901 SUPERFAMILY TPR-like 233 450 IPR011990 GO:0005515
Dere12g1611 901 Gene3D - 505 724 - -
Dere12g1611 901 FunFam N-terminal acetyltransferase A, auxiliary subunit 2 503 - -
Dere12g1611 901 Gene3D - 2 503 - -
Dere12g1611 901 SUPERFAMILY TPR-like 21 263 IPR011990 GO:0005515
Dere12g1611 901 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Dere12g1611 901 Pfam N-terminal acetyltransferase A, auxiliary subunit 187 696 IPR021183 -
Dere12g1611 901 MobiDBLite consensus disorder prediction 606 622 - -
Dere12g1611 901 Coils Coil 596 620 - -
Dere12g1611 901 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 1 826 - -
Dere12g1611 901 MobiDBLite consensus disorder prediction 579 594 - -
Dere12g1611 901 SMART tpr_5 380 413 IPR019734 GO:0005515
Dere12g1611 901 SMART tpr_5 77 110 IPR019734 GO:0005515
Dere12g1611 901 SMART tpr_5 223 256 IPR019734 GO:0005515
Dere12g1611 901 Pfam TPR repeat 84 123 - -
Dere12g1611 901 MobiDBLite consensus disorder prediction 579 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1611 Dere-ChrDere12 28597239 28611505 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1611 12 28597239 28611505 Dere11g1714 11 30871253 30890169 CCT
Dere12g1611 12 28597239 28611505 Dere12g1611 12 28597239 28611505 ECH