Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1714 ATGGGAGCTTCTCTGCCCCCCAAGGAGGCTAACCTCTTCAAGCTTATTGTTAAATCATATGAAACCAAACAATACAAGAAGGGACTCAAAGCAGCTGATGCCATTTTAAAAAAATTCCCAGACCATGGAGAAACTTTATCAATGAAGGGTTTGACATTGAATTGCATGGATCGTAAGTCTGAAGCATATGACCTTGTTCGTCAAGGACTAAAGAATGACCTTAAAAGTCATGTTTGCTGGCATGTTTATGGTCTTCTTTATCGGTCGGACAGAGAATATAGGGAGGCCATTAAGTGCTACCGGAATGCATTGAAAATAGATCCTGACAATATTGAAATCCTACGTGACCTATCACTATTACAGGCTCAAATGAGAGATTTAACTGGCTTTGTTGAGACAAGGCAACAGCTTCTGACACTTAAGCCAAATCATCGCATGAACTGGATTGGCTTTGCTGTTGCCCATCATTTGAATTCTAATGCATCCAAGGCAGTTGAAATTCTTGAAGCATATGAAGGGACCTTAGAAGATGATTATCCTCCTGAAAATGAGCGGTGTGAGCATGGGGAAATGCTATTATATAAGATCTCTTTGTTAGAGGAATGTGCATTTCTTGAGAGAGCTCTTGAGGAGTTGCGCAAAAAAGAATCTAAAATTGTTGATAAACTTGCATATAAAGAGCAAGAGGTTTCACTCATAGTGAAGCTTGGTCACTTGGAAGAAGGCGAGAAATTGTATCGGGCACTACTGTCCATGAATCCTGACAATTATAGATACTATGAAGGTCTCCAAAAATGTGTTGGCTTATATTCAAAAGATGACCATTATTCTCCAGAGGAAATAGATCAGTTAGATGCTTTGTATAAATCACTTGAGCAGCAATATAAGTGGTCTTCTGCTGTCAAGAGAATACCACTTGATTTTTTGCAAGGTGACAAGTTTCAAGAAGCAGCTGAAAATTATATTAGGTCTCTCCTAACCAAGGGAGTTCCATCTCTATTTTCTGATCTTTCTTCTCTGTACAATCACCCTGGGAAGGCAGACATTTTGGAGCAACTTATTCTGGAGTTAGAGCGTTCAATTAGGACAACTGGTCGATACCCTGGAAGCATGGACGAAGAGCCCCCTTCAACTCTGGTGTGGACTTTGTTTTTACTGGCTCAGCACTATGACAGGAGGGGCCAATATGAAATTGCTCTATCTAAAATTGATGAAGCTATAGAGCACACACCAACTGTCATCGATCTATATTCTGTCAAGAGTCGGATACTGAAGCATGCTGGTGATTTGGCTGCTGCTGCTGCACTTGCAGATGAAGCTAGGTGTATGGATCTTGCTGATCGATATATCAATAGTGAATGTGTTAAGCGTATGTTGCAGGCTGATCAGGTGGCTTTGGCAGAAAAAACTGCAGTCTTGTTTACAAAAGATGGGGATCAACACAACAACCTCCATGACATGCAGTGCATGTGGTATGAGCTGGCTTCTGGTAAAAGTTATTTTCGCCAAGGCGATCTTGGACGGGCTCTCAAGAAATTTTTAGCTGTGGAGAAGCATTATGCAGATATTACTGAAGACCAATTTGATTTCCATTCATACTGCTTAAGGAAAATGACGTTGCGGACTTATGTGGAAATGCTTAGATTTCAAGATCGATTACACTCCCATGCATATTTTCATAAAGCAGCTGCTGGAGCAATCAGATGTTACCTCAAATTGTATGATTCTCCTCCGAAGTCTACAGCTGAGGAGGATGATGACATGTCAAAGTTGCTTCCTTCTCAGAAAAAGAAACTGAGGCAAAAACAGAGAAAGGCAGAAGCACGGGCTAAGAAAGAGGCAGAAGAAAAGAATGAAGAGTCAAATGCCAGTGGTGTGTCAAAGTCTGGAAAACGACATGTAAAACCTGTTGATCTGGATCCACGTGGTGAAAAGTTGTTACAGGTTGAAAATCCACTATTAGAAGCCACAAAATATCTGAAGTTGCTGCAGAAGAATTCGCCTGATTCATTGGAGACACACTTGCTATCTTTTGAATTGTATATCAGAAAGCAGAAGATTTTGCTTGCCTTTCAGGCTGTAAAGCAGTTGTTGAGGTTGGATGCTGAACACCCTGATTCTCATCGTTGCTTGATTAAATTCTTTCATAAAGTGGCATCCATGGACGTTCCTGTGACTGACAGTGGGAAACTCATTTGGAGTGTCATAGAAGCTGAGCGCCCAACCATAAGTCAGTTGCATGAGAAATCTCTGTTTGAGGCAAACAACACTTTCCTTGACAAACATAGAGATTCTTTGATGCACAGAGCTGCTTCTGCAGAAATGTTGTGCATTTTGGATCCCAACAGAAAATCTGAGGCTGTCAAGTTGATTGAAGAGTCACCAAATGACCTTGTACCAAGAAATGGAGCACTCGGACCAATAAGGGAATGGAAACTTAAAGATTGTATTTCAGTCCATAAACTTCTTGGAACAGTCCTTGTTGAGCCAGATGCTGCATTGAGATGGAGAGTGCATTGTGCAGAGCTTTTCCCTAATTCCACATACTTTGAGGGCAGCTGCAGTTCTGCTTCTCCCAACTCGGTCTTCAATCAGATATGTAATAACTTCGAGAATGGGAGTCTTAACCATTCAGTGGGTGGTCAAAATGTGGACTCCTTCACATCAAATGGGAAACTAGAGGCATTTAAAGACCTCTCCATATCACAAAGTTGA 2715 0.4118 MGASLPPKEANLFKLIVKSYETKQYKKGLKAADAILKKFPDHGETLSMKGLTLNCMDRKSEAYDLVRQGLKNDLKSHVCWHVYGLLYRSDREYREAIKCYRNALKIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVAHHLNSNASKAVEILEAYEGTLEDDYPPENERCEHGEMLLYKISLLEECAFLERALEELRKKESKIVDKLAYKEQEVSLIVKLGHLEEGEKLYRALLSMNPDNYRYYEGLQKCVGLYSKDDHYSPEEIDQLDALYKSLEQQYKWSSAVKRIPLDFLQGDKFQEAAENYIRSLLTKGVPSLFSDLSSLYNHPGKADILEQLILELERSIRTTGRYPGSMDEEPPSTLVWTLFLLAQHYDRRGQYEIALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAAALADEARCMDLADRYINSECVKRMLQADQVALAEKTAVLFTKDGDQHNNLHDMQCMWYELASGKSYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRTYVEMLRFQDRLHSHAYFHKAAAGAIRCYLKLYDSPPKSTAEEDDDMSKLLPSQKKKLRQKQRKAEARAKKEAEEKNEESNASGVSKSGKRHVKPVDLDPRGEKLLQVENPLLEATKYLKLLQKNSPDSLETHLLSFELYIRKQKILLAFQAVKQLLRLDAEHPDSHRCLIKFFHKVASMDVPVTDSGKLIWSVIEAERPTISQLHEKSLFEANNTFLDKHRDSLMHRAASAEMLCILDPNRKSEAVKLIEESPNDLVPRNGALGPIREWKLKDCISVHKLLGTVLVEPDAALRWRVHCAELFPNSTYFEGSCSSASPNSVFNQICNNFENGSLNHSVGGQNVDSFTSNGKLEAFKDLSISQS 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1714 904 SMART tpr_5 380 413 IPR019734 GO:0005515
Dere11g1714 904 SMART tpr_5 77 110 IPR019734 GO:0005515
Dere11g1714 904 SMART tpr_5 43 76 IPR019734 GO:0005515
Dere11g1714 904 SUPERFAMILY TPR-like 380 707 IPR011990 GO:0005515
Dere11g1714 904 MobiDBLite consensus disorder prediction 580 594 - -
Dere11g1714 904 Gene3D - 505 725 - -
Dere11g1714 904 FunFam N-terminal acetyltransferase A, auxiliary subunit 2 503 - -
Dere11g1714 904 FunFam N-terminal acetyltransferase catalytic subunit (NAT1) 505 725 - -
Dere11g1714 904 Pfam N-terminal acetyltransferase A, auxiliary subunit 187 696 IPR021183 -
Dere11g1714 904 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Dere11g1714 904 SUPERFAMILY TPR-like 18 159 IPR011990 GO:0005515
Dere11g1714 904 SUPERFAMILY TPR-like 134 435 IPR011990 GO:0005515
Dere11g1714 904 Coils Coil 195 222 - -
Dere11g1714 904 Pfam TPR repeat 84 123 - -
Dere11g1714 904 MobiDBLite consensus disorder prediction 606 622 - -
Dere11g1714 904 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 1 826 - -
Dere11g1714 904 PIRSF NAT_A 1 818 IPR021183 -
Dere11g1714 904 Gene3D - 2 503 - -
Dere11g1714 904 Coils Coil 596 624 - -
Dere11g1714 904 MobiDBLite consensus disorder prediction 580 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1714 Dere-ChrDere11 30871253 30890169 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1611 12 28597239 28611505 Dere11g1714 11 30871253 30890169 CCT
Dere11g1714 11 30871253 30890169 Dere11g1714 11 30871253 30890169 ECH