Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1608 ATGGTCACCCCCGGTGTTGTCAATGTTTCTAGAAGAATAACAGCTTCTTTACTCATATCATGGCCTCCACTTTCTGCGCCCTACAAAACCCCTTTCCTTCGCATTTTCCATCCCATTAAGCATTATTCTTCCTCCTCCATTCCATTCAATTCCCTTTCCCCCAGATCGTCTTCCTCTCTACATTCAATCCTCAACTCTCATTCTGATACAAGATATTTTGGGTTCATTATGGATCTAATTTCGGGTCTACCGGACGACATAGGCCGAGACTGTTTGATTCGGGTTTCGTATCAGCACTTCTCGGCGGTCGCATCGGTGTGCAGAGGCTGGAAGACGGAGATTGAGATGCCGGAGTTTCGCCGTCGAAGGAAGAGCGCTGGCCTCACCCAGAAGATTGTCGTCATGGTTCAGGCACGAGTCGACTCGGAGAAGCCCGGTTCTGGGCTTCTAAAGAGCTCGATGATGAATCCGGTTTACCGCCTGACTGTTTTCGAACCGGGTACGGGTCGATGGAGCGAGATGCCTCCGGTTCCGGGTTTATCCGGCGGGTTACCTTTGTTCTGCCAGGTGGCCGGCGTCGGGTTCGATCTGGTTGTGATGGGCGGATGGGACCCGGACTCGTGGAAGGCGTCGAACGCGGTGTTTGTGTATAACTTCGTGTCCGGGAAATGGCGTCGTGGGGCCGACATGCCGGGCGGGCCCAGGGCGTTTTTCGGCTGCGCGTCGGACACGCGCCGGTTTGTGTTCGTCTCCGGCGGGCACAGCGAGGAGAAGAACGCGCTGAGGTCGGCGTTCGCGTACGACGTGGCGAGCGACGAGTGGGTCCCACTGCCTGACATGGCAAGAGAGCGGGACGAGTGCAAGGCCGTCTTCCAGAAGGGGAAGTTCCTCGTCATGGGAGGGTACTGCACGGAGATGCAAGGCCGGTTCGAGAGAAGCGCCGAGGCCTTCGATGTTGCCACGTGGGCGTGGGACCGAGTGGTGGAGGAGTTCCTCGATGCCTCCACGTGTCCGAGGACCTACGTGGAGGGTGGCGATGGCGATGGCGATGGCGATGAGAGAGTGTACATGTGTGGTAGTGGTGGGGACGTGTTGGCATTGCAAGACTCCACGTGGCAACCGATCGCCAAGTGTGGAGATGAGATACGAAACATTGCGTTTGTGAGGCCGTGGGGTGGGAAAATGCTGTTGATTGGATCAAGTGCGTACAGTGAACCGCACGTGGGAATGGTACTGGACTTGAAAAGTGGTAACTGGATAAAAATAGACAGCCCAGAGAGCTACACAGGCCACGTTCAATCAGGTTGTCTGTTAGAAATTTAG 1323 0.5571 MVTPGVVNVSRRITASLLISWPPLSAPYKTPFLRIFHPIKHYSSSSIPFNSLSPRSSSSLHSILNSHSDTRYFGFIMDLISGLPDDIGRDCLIRVSYQHFSAVASVCRGWKTEIEMPEFRRRRKSAGLTQKIVVMVQARVDSEKPGSGLLKSSMMNPVYRLTVFEPGTGRWSEMPPVPGLSGGLPLFCQVAGVGFDLVVMGGWDPDSWKASNAVFVYNFVSGKWRRGADMPGGPRAFFGCASDTRRFVFVSGGHSEEKNALRSAFAYDVASDEWVPLPDMARERDECKAVFQKGKFLVMGGYCTEMQGRFERSAEAFDVATWAWDRVVEEFLDASTCPRTYVEGGDGDGDGDERVYMCGSGGDVLALQDSTWQPIAKCGDEIRNIAFVRPWGGKMLLIGSSAYSEPHVGMVLDLKSGNWIKIDSPESYTGHVQSGCLLEI 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1608 440 CDD F-box_AtAFR-like 79 123 - -
Dere12g1608 440 PANTHER OS02G0208700 PROTEIN 77 440 IPR044595 GO:0080037|GO:2000762
Dere12g1608 440 Gene3D - 89 376 IPR015915 GO:0005515
Dere12g1608 440 SUPERFAMILY Kelch motif 157 402 IPR015915 GO:0005515
Dere12g1608 440 Pfam Galactose oxidase, central domain 197 241 - -
Dere12g1608 440 SMART kelc_smart 196 244 IPR006652 GO:0005515
Dere12g1608 440 SMART kelc_smart 247 294 IPR006652 GO:0005515
Dere12g1608 440 SUPERFAMILY F-box domain 77 122 IPR036047 GO:0005515
Dere12g1608 440 Pfam F-box domain 80 115 IPR001810 GO:0005515
Dere12g1608 440 Pfam Kelch motif 248 280 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1608 Dere-ChrDere12 28556760 28558082 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1608 12 28556760 28558082 Dere11g1712 11 30842127 30843206 CCT
Dere12g1608 12 28556760 28558082 Dere12g1608 12 28556760 28558082 ECH