Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1712 ATGGATTTGATTTCCGGTCTCCCCGACGATGTAGCTGTGGACTGTTTGATTCGGGTTTCCTACGACCAGTTTCTGACTGTTGCGTCGGTATGTAAAAACTGGAAGACGGAGATTGAACAGCCCGAGTTTCGCCGGCGACGGAGGAATACAGGTCATACCCAGAGACTCATCGTGATGGTTCAAGCACGGGTTGACTCGGATAAACGGGTCGGTTCTCTGATGAAGGGTTCGACAAATCCGGTTTACCGTTTGAGTGTATACGATACGCGTTCGGGTAATTGGAGCGAGTTGCCCCCTCCTCCAGGTTTCGCTGGCGGGTTACCAATGTTCTGTCAAATAGCGGGTGTCGGGTATGACTTGGTTCTAATGGGCGGGTTGGACCCGAACTCGTGGAAATCTTCGAATTCCGTGTTTATCTATAATTTCATGTCGTCTAAATGGCGACGTGGGGCCGACATGCCGGGTGGGCCCAGGACGTTCTTCGGGTGTGCGTCCGATTCTGATCGAACGGTTTACGTCGCGGGTGGGCATGACGACGAGAAGAACGCGTTGAGGTCAGCGCTCGCGTATGACGTGGCAAAGGACAAGTGGATCCCGCTTCCTGACATGGAAAGGGAGAGGGACGAGTGCAAGGCGATTTTCCACCGTGGAAGTCGGAAGTTCTGCGTTATTGGCGGTTACTGCACGCAGATGCAAGGGCGGTTTGAGAGAAGCGCCGAGGCCTTCGACGTCGCCACGTGGAAATGGGACCCAGTGGAGGAGCAGTTCTTGGGAGCTGCTACGTGTCCGAGGACATGCGTGGAGGGTGATGATGGGGGGGATGTCTACAAGTGCAGGGGTGGTGATGTGGTGGTATTGCGAGGTGACGCGTGGCATGAGGTGGCGAAACTGCCAGGTGAGATACGTGAGCTGGCGTACTTGAGAGGGTGGGAAGGGAGGTTGTTGTTGATTGGATCGAGAGGGTATGCTGAACCGTATATGGGCTTTGTATTGGATCTTAAGAGTAAGTGTTGGAGAAAGTTGGAGAGCCCAATGGGATTTACGGGCCACGTTCAGTCAGGTTGTCTCATGGAAGTTTAG 1080 0.5398 MDLISGLPDDVAVDCLIRVSYDQFLTVASVCKNWKTEIEQPEFRRRRRNTGHTQRLIVMVQARVDSDKRVGSLMKGSTNPVYRLSVYDTRSGNWSELPPPPGFAGGLPMFCQIAGVGYDLVLMGGLDPNSWKSSNSVFIYNFMSSKWRRGADMPGGPRTFFGCASDSDRTVYVAGGHDDEKNALRSALAYDVAKDKWIPLPDMERERDECKAIFHRGSRKFCVIGGYCTQMQGRFERSAEAFDVATWKWDPVEEQFLGAATCPRTCVEGDDGGDVYKCRGGDVVVLRGDAWHEVAKLPGEIRELAYLRGWEGRLLLIGSRGYAEPYMGFVLDLKSKCWRKLESPMGFTGHVQSGCLMEV 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1712 359 Pfam Kelch motif 168 203 IPR006652 GO:0005515
Dere11g1712 359 SUPERFAMILY Kelch motif 78 344 IPR015915 GO:0005515
Dere11g1712 359 CDD F-box_AtAFR-like 3 47 - -
Dere11g1712 359 Pfam Kelch motif 108 158 - -
Dere11g1712 359 SUPERFAMILY F-box domain 1 54 IPR036047 GO:0005515
Dere11g1712 359 Gene3D - 11 283 IPR015915 GO:0005515
Dere11g1712 359 Pfam F-box domain 4 36 IPR001810 GO:0005515
Dere11g1712 359 SMART kelc_smart 119 168 IPR006652 GO:0005515
Dere11g1712 359 SMART kelc_smart 170 217 IPR006652 GO:0005515
Dere11g1712 359 PANTHER OS02G0208700 PROTEIN 2 359 IPR044595 GO:0080037|GO:2000762
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1712 Dere-ChrDere11 30842127 30843206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1712 7 312 Miscellaneous Gene Families AT4G33900 23.926 3.70e-07 49.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1608 12 28556760 28558082 Dere11g1712 11 30842127 30843206 CCT
Dere11g1712 11 30842127 30843206 Dere11g1712 11 30842127 30843206 ECH