Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1530 ATGGAAAGCAATATACCAATAATAGCTAAGAGAGTGTGGCACATATTACGTGTGGCCTTCTTCATGTTGAGGAAAGGCATATCAAAGGGGAGGCTGATGATGGACCTCAACATGATGCTCAAGCGCCGCCGCAAGATCGCCGGCAAGGCTATTTCCAACCTCATGTTCCACCACCACCACGGCGGCCGCTCTCACAACTCGCGCTTACAGTTCTCCGGCCAGCCCGAGTACGAGTTCAGCTGCAGCAACACACCAAACAACTACTTCTTTCCCGTCAGCAGCGGCAAGCGCCACCGCAGCAGCCACCACGCCCACACGCATTTCTTTGCGTGCGCTCACGCGCCACCTGCGCAGGACGACGAAGCGGTGGTGAAGGCCGTGTTGGAGATGCTGAACAATGAAATTATGGTGGAGGCGTCGCCTGCGCTTCCTGGGTTTGGCCAGAGCCCGATGGTGCGGCAGCTGAGGGTGACGGACTCACCATTCCCGTTACGAGACGCCGATGACGACAACCAGGTGGACGAGGCGGCGGAAGAGTTCATAAAGAGGTTTTATAAGGAGTTGAAGAAGCAGGCTTGA 579 0.5613 MESNIPIIAKRVWHILRVAFFMLRKGISKGRLMMDLNMMLKRRRKIAGKAISNLMFHHHHGGRSHNSRLQFSGQPEYEFSCSNTPNNYFFPVSSGKRHRSSHHAHTHFFACAHAPPAQDDEAVVKAVLEMLNNEIMVEASPALPGFGQSPMVRQLRVTDSPFPLRDADDDNQVDEAAEEFIKRFYKELKKQA 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1530 192 Pfam Cotton fibre expressed protein 170 191 IPR008480 -
Dere12g1530 192 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 4 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1530 Dere-ChrDere12 27847224 27847802 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1530 12 27847224 27847802 Dere11g1614 11 29765114 29765653 CCT
Dere11g1614 11 29765114 29765653 Dere12g1530 12 27847224 27847802 ECH
Dere06g2086 06 36403224 36403862 Dere12g1530 12 27847224 27847802 ECH
Dere12g1530 12 27847224 27847802 Dere12g1530 12 27847224 27847802 ECH