Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1470 ATGGCTTTCTTCTGGTTGGTCTGTACGATCATCATCTACCATTTATTTCCTGCAACACCCATTTCCTCGGACCCCTCCTTGAGCTCAAATGAACTCTCCTCGATCCCCTCCAAGTTTTTAAGTTTTGCCAAGAGGCCTAAGGTTTTTGATTGGATGGTCGGAATCAGGAGAAAGATTCATGAGCATCCTGAATTGGGTTACGAGGAATTTCAGACCAGTGAGCTGATAAGAGCAGAACTGGATAAATTGGGCATCTCATATAAACACCCAGTTGCAGTCACTGGTGTGATTGGCTATATAGGCACCGGACGGCCTCCCTTCGTCGCAATACGAGCTGATATGGATGCTCTTGCTATGCAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAGTACCTGGAAAGATGCATGCTTGTGGCCACGATGCTCATGTTACTATGCTTCTTGGTGCTGCAAAGATCCTCAAAGAGCATGAAAAAGAGATACAGGGAACTGTGGTTCTTGTTTTCCAACCAGCAGAGGAAGGAGGTGGAGGGGCTAAGAAAATCTTGGATGCTGGAGCCTTAGAAAATGTCACTGCTATCTTTGGATTGCACGTTGGACCAAAGTTACCTATAGGTGAAGTGGCCTCTAGATCTGGTCCTATGCTAGCAGGAAGTGGCTTCTTTGAAGCAGTCATAAGTGGAAAGGGAGGTCATGCAGCTATTCCTCAGCATTCTATAGACCCCATATTAGCGGCTTCTAATGTGATTGTTAGCTTGCAGCATCTTGTTTCTCGTGAGGCTGATCCTTTGGACTCTCAGGTCGTGACAATAGCAAAATTCCAAGGAGGTGATGCATTCAATGTTATTCCAGATTCTGTCACAATTGGTGGCACCTTTCGAGCCTTTTCGAAAGAAAGTTTTAAGCAACTAAGACAGCGGATTGAGCAGGTTGTCACTGGGCAAGCTGCTGTACAGAGGTGCAATGCAACAGTTTACTTTCTCGAGGACAAGAAGCCCTTCTTCCCTGCAACTATTAACAATGGCGACTTGCACGAGCATTTTCGACTTGTTGCAGGAGATATGCTTGGCAAGAAAAAGGTTAATGACATGCAACCATCGATGGGATCTGAGGACTTCTCATTCTATCAAGAGGTTATACCTGGTTTCTTTTTCTTTCTTGGCATGGAGAATGCTTCTCTTGAACGGCTGGAGTCGTTGCACTCGCATTATTTCAAAGTCAATGAAGATGTACTTCCTTATGGAGCTGCCCTTCATGCATCATTAGCTACTAGTTATCTTCTCAAATTTCAGCAGGATGTACAAGTTGTAAAAGGGAAATATCATGATGAATTATGA 1338 0.4454 MAFFWLVCTIIIYHLFPATPISSDPSLSSNELSSIPSKFLSFAKRPKVFDWMVGIRRKIHEHPELGYEEFQTSELIRAELDKLGISYKHPVAVTGVIGYIGTGRPPFVAIRADMDALAMQEMVEWEHKSKVPGKMHACGHDAHVTMLLGAAKILKEHEKEIQGTVVLVFQPAEEGGGGAKKILDAGALENVTAIFGLHVGPKLPIGEVASRSGPMLAGSGFFEAVISGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVTIAKFQGGDAFNVIPDSVTIGGTFRAFSKESFKQLRQRIEQVVTGQAAVQRCNATVYFLEDKKPFFPATINNGDLHEHFRLVAGDMLGKKKVNDMQPSMGSEDFSFYQEVIPGFFFFLGMENASLERLESLHSHYFKVNEDVLPYGAALHASLATSYLLKFQQDVQVVKGKYHDEL 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1470 445 SUPERFAMILY Bacterial exopeptidase dimerisation domain 218 325 IPR036264 -
Dere12g1470 445 Gene3D - 217 335 - -
Dere12g1470 445 FunFam N-acetyldiaminopimelate deacetylase 217 335 - -
Dere12g1470 445 Pfam Peptidase family M20/M25/M40 109 423 IPR002933 GO:0016787
Dere12g1470 445 PIRSF Amidohydrol_AmhX 37 431 IPR017439 GO:0016787
Dere12g1470 445 NCBIfam amidohydrolase 52 414 IPR017439 GO:0016787
Dere12g1470 445 CDD M20_IAA_Hyd 52 427 IPR044757 GO:0009850|GO:0016787
Dere12g1470 445 Gene3D Zn peptidases 52 412 - -
Dere12g1470 445 Pfam Peptidase dimerisation domain 218 314 IPR011650 -
Dere12g1470 445 PANTHER PEPTIDASE M20 FAMILY MEMBER 30 436 IPR017439 GO:0016787
Dere12g1470 445 SUPERFAMILY Zn-dependent exopeptidases 47 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1470 Dere-ChrDere12 26915380 26919799 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1470 12 26915380 26919799 Dere11g1558 11 28452143 28456562 CCT
Dere12g1470 12 26915380 26919799 Dere12g1470 12 26915380 26919799 ECH