Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0338 ATGGAGCGCAAGAAAACGATGACCATGAATTGGAAAGACCTAGGAGACGACGATGACGACGAGCACTTCTTCGAGAGCGCGGCCGGCGGTTCGTCCTCCGACGATGACGAGGAGTTCGAAGACACCCGCATGTCCTTCTCCTCCAACTCTCAAAAATTCAGAATCCTCACGAGAAAAGCATCAACCACAGCGGTGGCAGTAGCGATCCCTAACTTCGACTATAACCTATGGATGGCGGCACCTGGATCGATCACGGAACGCAGGAAGCGATTGCTTCACGGAATGGGCCTGAACGAGAACAAGGAGAGTCTGAGGTTGGCGAGCATAGCGATCGGCCGAGCTATGACGAGGAAGTTTGAGAATGCTACACCGAATTCTGATCAATCCGATCAGACGAAAGAGACGGTTTCTGATTCTAATGCTGCGAAGTCGCTTCCTCCTGCAGCTCCTGCTACTACTGCTGCTGCCGCCGCCGCTGCTCCTCCTCCTCCTGCCGCTGATAGTGCTAGTACTCCTGTGTCTGCTGCGTCATCGGAAGGACGTAAAACAGAGCAACACAAAACAGAGCATTCCCATGTTCCGTTCGTTCTCGTAAGGTCGCGTTCCGATGGAGATGTAGATGCCGATGCGTATACTATGTCCAAAATGAGGAAGGAGGAACTCATAGGTAAGGTGTCAAAGCAGCGTCTCACAAGAACATCCTCAGAGATCACCATCGCGCGTCCTCGTATGTGTCCGTACACATACTGGACCCCCGCCCGAGCCGCCGCAGCCGTCGCCGCCACGGCGAAAGAGGAGGCCAGTTTGGCCGCTTCAGGGAACAACCAATCAAGCCGCCAACACGGCCGTAAGCTAACTTCAATCGTGTCCAACACCGGATTCGGGTCTTTCTTCCTCATCAAGAATCTCGACACAGGAAAAGAGTTCATCGTCACCGGAAAGGACCACGGCGAAAACGGCACATGGAGCAGACTGAACGACTTACAAACGGGGAAGAAGCTAACGATGGAGGAGTTCGAGAAATCCGTAGGACACTCCCCTGTCGTTAAAGAGCTTATGCGACGCGAGAGAGAGAAAAGCGACGGGAATAAGCTGAGTGCGAATTCTTACCTCAACAAGAGCTTGAGAATGAGCAAGAAAACGGGTGCCGCATTGTTGAAGAACATTAAGGGAGTGGGACGTGTGGCTAGCGGGTTCATCGGAGAAAGAGAGAGATCAGAGAGCATTAAAGAACATCCAACGCCTCCTTTACCTCCATCTGCACCACAACCAAATAGTTCAGATCCGAATCAGAAACAGAGTAAGAGCGAATGGGTGAGGGTTAGGGTGAGTGGGAAATCTCACAAGGAGCTTTCTGCGTTACATATGTGTCAAGAATTTCAGGCACACGAGGGGTGTATTTGGACCATAAGGTTCAGTTGGGACGGGCATTATTTGGCGAGTGCAGGCGAGGATAAGGTGATTCATGTGTGGGAAGTGCAGGAGTGTGAGCTCACGTCATTGACGCCGGAGGAAGGAAATCTTACCCCAATTCATCCGTCGCTGCTTGCTTCGTCGGCTGCACCGGAGGCAGCGGCGGCGGATGAAGGGGCTGCGCCCAAGAAGAAGGGTAAAACTGGGAATAAAAAAGATGATAAGGTTCCGGAGTACGTTCATGTGCCGGAAACTGTGTTCTCCCTTTCGGATAAACCCTTGTGTACTTTCCAAGGTCATTCCGATGACGTTTTGGATTTGTCTTGGTCCAAATGTCAGTTACTTCTCTCGTCTTCAATGGACAAAACAGTGAGACTATGGGACTTGGAATTGAAAATGTGCTTGAAGGTGTTTACTCATAATGACTATGTAACCTGCGTACAGTTCAACCCTATAGACGACGATTATTTCATTAGTGGCTCACTCGATGCTAAGATTAGAATATGGAGCATCCCTCAACGACAAGTCGTAGATTGGGCTGATGCCCATGAAATGGTCACTGCCGTTTCTTACACTCCTGATGGTCAGGCTGCTCTTGTTGGTACACATAATGGGACTTGTTGCATGTATAGTACAGAAGATAGCAAATTAAGTCAAACAAGCACGATTGATTTACAACAGAATAAGAAAGCTCCGCTAAGAAAGATTACTGGTTTTCAGTTTGCACCAAGTAATCCATCAGAAGTGCTTGTCACTTCAGCTGACTCCAGGATTAAAATTGTTGAGGGCACAAAACTTGTTCATAAGTTCCAAGGTTTTCGAAATGCAAACAGCCAAATTGCAGCATCATTTAGTCCAAACGGAAGACACGTGATGAGTGCAAGCGAAGATTCGCAGGTCTATGTATGGAAGTACGAGGAACCTCGACAAGGAGCCAACAATGGAAAAACAAGACAACTAGTCATTACTCGAGCTTTCGAGAGCTTCCCATGTAAGGATGTTTCAGTCGCAGTTCCATGGCCTTTCACCATAAAAGGCGATCCCCCACTAGCCCAAAAGAAGAACGCAAAACGCTCTTCAGAAGACAACCTTTCTGCCAGTAAGAAAAGTAATCTGCCTCCTCTTCCCAACAAGAAGGAAGATCCTTCCACCACCTCCAACGCAGAACCTAACGCCGACGCTGGTTCGCCGGCGAAAAGCACGAGTCCGTTGCCGCCTCTTCCTCCCAAGAAAAGCAACAACAACAACAACGAAGGTACCACCGCCGCTGAAAATGGTTCGGATTCTCAGGATTGTCCCTCGGCTTCTCCGGATCAGGAAGCCGACCCTGAAGCGATATCGCGGACGGAGGGCGGGGTCGGCGAGTCGTTCGGCTCGGATACTTCTTCGTCGGTGAGGAGTGATGATCCATCTGCTATATCAGCTTCAAGGACATCGTCCATGGCGTCTTCTAGGTCTTCCTCTCGGTCTGTGCTTGATGGTAGCCAAGGTGCCACAGCAGGTCATCCTTTAGCATGGGGCTTGGTAATTGCGACGGCCAGCATAGGAGGAGAAATCAGGTGCTATCAGAATTTTGGGCTGCCTAAAAAGATGGGTGGTGTTCTTTTCTGA 3024 0.4993 MERKKTMTMNWKDLGDDDDDEHFFESAAGGSSSDDDEEFEDTRMSFSSNSQKFRILTRKASTTAVAVAIPNFDYNLWMAAPGSITERRKRLLHGMGLNENKESLRLASIAIGRAMTRKFENATPNSDQSDQTKETVSDSNAAKSLPPAAPATTAAAAAAAPPPPAADSASTPVSAASSEGRKTEQHKTEHSHVPFVLVRSRSDGDVDADAYTMSKMRKEELIGKVSKQRLTRTSSEITIARPRMCPYTYWTPARAAAAVAATAKEEASLAASGNNQSSRQHGRKLTSIVSNTGFGSFFLIKNLDTGKEFIVTGKDHGENGTWSRLNDLQTGKKLTMEEFEKSVGHSPVVKELMRREREKSDGNKLSANSYLNKSLRMSKKTGAALLKNIKGVGRVASGFIGERERSESIKEHPTPPLPPSAPQPNSSDPNQKQSKSEWVRVRVSGKSHKELSALHMCQEFQAHEGCIWTIRFSWDGHYLASAGEDKVIHVWEVQECELTSLTPEEGNLTPIHPSLLASSAAPEAAAADEGAAPKKKGKTGNKKDDKVPEYVHVPETVFSLSDKPLCTFQGHSDDVLDLSWSKCQLLLSSSMDKTVRLWDLELKMCLKVFTHNDYVTCVQFNPIDDDYFISGSLDAKIRIWSIPQRQVVDWADAHEMVTAVSYTPDGQAALVGTHNGTCCMYSTEDSKLSQTSTIDLQQNKKAPLRKITGFQFAPSNPSEVLVTSADSRIKIVEGTKLVHKFQGFRNANSQIAASFSPNGRHVMSASEDSQVYVWKYEEPRQGANNGKTRQLVITRAFESFPCKDVSVAVPWPFTIKGDPPLAQKKNAKRSSEDNLSASKKSNLPPLPNKKEDPSTTSNAEPNADAGSPAKSTSPLPPLPPKKSNNNNNEGTTAAENGSDSQDCPSASPDQEADPEAISRTEGGVGESFGSDTSSSVRSDDPSAISASRTSSMASSRSSSRSVLDGSQGATAGHPLAWGLVIATASIGGEIRCYQNFGLPKKMGGVLF 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0338 1007 MobiDBLite consensus disorder prediction 529 546 - -
Dere12g0338 1007 MobiDBLite consensus disorder prediction 119 195 - -
Dere12g0338 1007 CDD WD40 458 775 - -
Dere12g0338 1007 PANTHER WD REPEAT DOMAIN 44 17 999 IPR040324 -
Dere12g0338 1007 MobiDBLite consensus disorder prediction 1 44 - -
Dere12g0338 1007 SUPERFAMILY WD40 repeat-like 454 780 IPR036322 GO:0005515
Dere12g0338 1007 MobiDBLite consensus disorder prediction 519 546 - -
Dere12g0338 1007 ProSitePatterns Trp-Asp (WD) repeats signature. 479 493 IPR019775 -
Dere12g0338 1007 Gene3D - 444 800 IPR015943 GO:0005515
Dere12g0338 1007 ProSiteProfiles Trp-Asp (WD) repeats profile. 608 642 IPR001680 GO:0005515
Dere12g0338 1007 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 460 494 - -
Dere12g0338 1007 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 608 642 - -
Dere12g0338 1007 MobiDBLite consensus disorder prediction 1 17 - -
Dere12g0338 1007 MobiDBLite consensus disorder prediction 836 869 - -
Dere12g0338 1007 ProSiteProfiles Trp-Asp (WD) repeats profile. 568 601 IPR001680 GO:0005515
Dere12g0338 1007 MobiDBLite consensus disorder prediction 180 195 - -
Dere12g0338 1007 PRINTS G protein beta WD-40 repeat signature 586 600 IPR020472 -
Dere12g0338 1007 PRINTS G protein beta WD-40 repeat signature 479 493 IPR020472 -
Dere12g0338 1007 PRINTS G protein beta WD-40 repeat signature 628 642 IPR020472 -
Dere12g0338 1007 MobiDBLite consensus disorder prediction 925 966 - -
Dere12g0338 1007 MobiDBLite consensus disorder prediction 403 440 - -
Dere12g0338 1007 MobiDBLite consensus disorder prediction 882 907 - -
Dere12g0338 1007 MobiDBLite consensus disorder prediction 119 142 - -
Dere12g0338 1007 ProSiteProfiles Trp-Asp (WD) repeats profile. 754 784 IPR001680 GO:0005515
Dere12g0338 1007 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 568 601 - -
Dere12g0338 1007 MobiDBLite consensus disorder prediction 813 970 - -
Dere12g0338 1007 SMART WD40_4 644 682 IPR001680 GO:0005515
Dere12g0338 1007 SMART WD40_4 956 994 IPR001680 GO:0005515
Dere12g0338 1007 SMART WD40_4 693 733 IPR001680 GO:0005515
Dere12g0338 1007 SMART WD40_4 453 492 IPR001680 GO:0005515
Dere12g0338 1007 SMART WD40_4 602 641 IPR001680 GO:0005515
Dere12g0338 1007 SMART WD40_4 561 599 IPR001680 GO:0005515
Dere12g0338 1007 SMART WD40_4 734 775 IPR001680 GO:0005515
Dere12g0338 1007 ProSiteProfiles Trp-Asp (WD) repeats profile. 460 501 IPR001680 GO:0005515
Dere12g0338 1007 ProSitePatterns Trp-Asp (WD) repeats signature. 586 600 IPR019775 -
Dere12g0338 1007 Pfam WD domain, G-beta repeat 459 491 IPR001680 GO:0005515
Dere12g0338 1007 Pfam WD domain, G-beta repeat 563 599 IPR001680 GO:0005515
Dere12g0338 1007 Pfam WD domain, G-beta repeat 605 641 IPR001680 GO:0005515
Dere12g0338 1007 Pfam WD domain, G-beta repeat 737 775 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0338 Dere-ChrDere12 5763413 5769420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0338 565 786 Miscellaneous Gene Families AT5G08390 23.913 3.27e-11 65.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0338 12 5763413 5769420 Dere11g0419 11 6936838 6945252 CCT
Dere12g0338 12 5763413 5769420 Dere12g0338 12 5763413 5769420 ECH