Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0316 ATGGAATCATCTAGTCAACCTCCAGGGGAAGACGATCCATATAGTGCTATCTCATTAGACTGGTCTGCCATTGGAAAGCATAGAGTTAGGAACTGTGCTTGGGATGCTTTTAATATTAAAACCCTAAACTCCGTTTCTTTCTGTGGTGGAACTAAAGTTTCTGACATGTCCTTATGGGCTACAAATCCATGGTCAAATGCTTCATCCATAGCTAATCCTCCTTTGCATGAATTACGTAGCCGCAACGCGCTGAGCACAGACGCATTGGACACTTGGGACGATATGGGTAGTTTACAGGTCACATGTCTAGCACACATGGATTCCCTAGGGATAAAAACAGTTATTAATGTCGATGAATCTTCAACCGCTCCTTTCTCTTGTGCCTGGATGAAGCTGTTATCATCTCGAGTTTGTGCAAATGTTCTCGAGAGAGCTGCTATAGATGAATTGACAAACTCTAAGACAAAGAAACTGAAGTTTAATGACTGTCATGATGTATTGCCTGCAGCTTCTGTTGAGTGTTCTAGTTCTCGAAGAAGATGCTATCTGCGTAAAACGAAGATTGTTGACTTTGGGATGCTCGTTTCCACATGTATTGGTGGAAGTTCCTGTTCGCTTGGCCAACATCGAGGGGGTCCATTTGTTTCTCTTCCAGGTGTTGATGATTTCAATGATCCTGTTACTATTTCTATTGCTGAAAGTTTTCGACGATTTCAGTTCAAGGTTTGTGTAAAATCAGATGGTTTTGTAGGAGGACTGGATTTGTGGTGGGATTATGGAGTCAACCTTAACATTCTTTACAGATGTGATCTACTCGATCTTGGGTTTCATGGGTCTGCCTTTACGTGGTCTAACAAACAACTGAACGGAGCCTATATTAAAGAACGCAAGGATCGAGCATTACATAATGTTTGTTGGAGAGCTCTTCCACCTAATACACAGTATGGTAAAAGGAAGTTTCGCTTTGAACTCATGTGGATTGACAACCCTAATCTACTGGGCGTAATTGAAGGCTGTTGGAGACAGAGCAGGGTCAAGGGGGAAGAAGCACTACTAATTTTTCTTAAAAACCTTGCTAGAGTTCGCAGAGTATTGTTAAAATGGAGTAAATGTGTGTTCTCTAATAACAAGAAGCAGATTGAAGAATTGTTGATCCGATATAGACACTGTTTTGAGCAAGAAAGAACGGAGGCTTCAATATTGGAGGCTGACACTATTGTGAAGCAACTAAAGGAATTTTGGGATAGAAAGGAATGCCACTGGGCTCAGCGTTCTCGAGTCAAATGGATGACCCGTGGGGATAAAAACACCTCTTTCTTCTACTTGACAATAGTACAACGTCGACAGAAGAATAAGGGCATATTATTTACTCGAGTATCAAAGCTGTTGAAAGTATCTCCAACATGGGATGAGATGGTGTTCCCTAGTGTTCATTTACATAAGAATTTGAACTACAGTTTTAATGGCTATCAGGTGCCTGTCATTCCTAGAGCTTCGAGATCAACTAGGGGGAAGGGTACAATAAGGAAGAAGAGTGAGAGCAATCAGATACAAGCTTTTGAAATTTTGGCTAGTGTAGCTGGCAACTTTCTGCAGGAGAATGAAAACTCCAATATTGATAATGGTGCTTCTGGGAAAGATCCTATTGATTTTGTTGGAATCAACATAAAAGATAAACAAGAAGAAGCAGGGTCATTTAAGGGTGATTTCTTTGAGCATGGAAGTTGCAGCGGAAATGCCTCTGGCTTTGTCTCTGGTTTGCAAGGGAAGCTTAATGACCAAAGAGTTGTGGGCTATTCATCTTTACTTGGCAGTCATCTTGAAGGTCAAGGACAAAATGTTTTTGAGAGGGAAGGAGATGGACCGATAAAAGGGAATTGTATGAATGAGGGAATTGTCCACATTGATGGCAGCTTTGCTGAAGTGGTTGAACCAGACCACAGAGCTTCTAAATGGGAAAGTTCAGAAAATTATGTAGAAAAGCCTTCCTTGGAAGGCCTTACACATGGTTCCACTGGTAGGAAATTATTTAATAGAGATGATGACGAAAACTTTGATAGGTGTACTCAGGTAAGATCTAAGAATAAGATCTCTGGCCCTCCGCCGGACATGCCCTTTCAAAGAGTGAAAAGTGTTTCTGAATCCAAAAGTCGTGATATAGGCCAAAAATCGAAGGATGTGAGTTTATTTGGAAATGATGACAGTGTTGATAGGGATAATGATGTGCTTGAAAGCTCACAGAAGATGTATCCGTTTAAGAAGAGGAAGTTCTTCAACCAGACCTCATCATCTGCATCTGATAGGGGATCTCACTGTCATGGCATATTTGATTCTTCTGACACCAGAGTAGATGGTGCGAACCATGGTGCAGCAATTGAAGCATCATCCTCTATAGCTGGTCAACAAGTACACCCTAGGTCAAGGGATTGTAATGTGAAGCTTAGCATAAAATCCTTTAAAGTCCCAGAACTTTTTATTGATATTCCTGAAACTGCAACTATTGGTTCATTAAAGAGGACAGTTATGGAGGCAGTGACAGCTATATTAGGAGATGAACTACATGTGGGTATTCTTCTTCAGGGAAAGAAGGTCCGAGATGACAACAAAACTCTAATCCAGACTGGGATTTCTCAAGATGATAAACATCATAGATTAGGGTTCATGTTGGAGCCAAGACATACTCAAATTGCGCCATCTTCATACAATGAAAGCGCTTGTTTTCAAACCACTAGCTCGCATCGGGATATATCCAGGAAATCTACATCTTTGATGCTACAACAAAGAACTTATAATGTCTCCCAAGAGCATTCCCTGATTAAATTTGAAAGTTGTGGTGAACGTGACCTTAATGTGGTCCCCTCTGTAGCAGATACTTCCCCTAACAGTACCATGTCAAAGTGTCGTGCTCTGGTTGCAGTTCCAGCCATTAACATGGAGGCATTAGCTGTCATTCCCTTCCGGCGTAAACCTGGAAATACTGACTTTGTGCAGCGCCGAATCAGGAGGCCTTTCTCTGTTTCTGAAGTGGAAGCACTGGTTCAGGCAGTTGAAAAACTCGGAACTGGAAGATGGCGTGATGTGAAACAGTGTGCTTTTGACAATGCAAAACACAGGACTTATGTGGATTTGAAGGATAAGTGGAAGACATTAGTGCACACTGCAAGAATCTCCCCTCAGCAAAGGAGAGGAGAACCTGTTCCTCAGGAGCTTTTGGACAGAGTCTTAGCTGCTCATGCCTATTGGTCTCAACCCCAATCTAAGCATCAAGTTAAACCACTTTGA 3282 0.4171 MESSSQPPGEDDPYSAISLDWSAIGKHRVRNCAWDAFNIKTLNSVSFCGGTKVSDMSLWATNPWSNASSIANPPLHELRSRNALSTDALDTWDDMGSLQVTCLAHMDSLGIKTVINVDESSTAPFSCAWMKLLSSRVCANVLERAAIDELTNSKTKKLKFNDCHDVLPAASVECSSSRRRCYLRKTKIVDFGMLVSTCIGGSSCSLGQHRGGPFVSLPGVDDFNDPVTISIAESFRRFQFKVCVKSDGFVGGLDLWWDYGVNLNILYRCDLLDLGFHGSAFTWSNKQLNGAYIKERKDRALHNVCWRALPPNTQYGKRKFRFELMWIDNPNLLGVIEGCWRQSRVKGEEALLIFLKNLARVRRVLLKWSKCVFSNNKKQIEELLIRYRHCFEQERTEASILEADTIVKQLKEFWDRKECHWAQRSRVKWMTRGDKNTSFFYLTIVQRRQKNKGILFTRVSKLLKVSPTWDEMVFPSVHLHKNLNYSFNGYQVPVIPRASRSTRGKGTIRKKSESNQIQAFEILASVAGNFLQENENSNIDNGASGKDPIDFVGINIKDKQEEAGSFKGDFFEHGSCSGNASGFVSGLQGKLNDQRVVGYSSLLGSHLEGQGQNVFEREGDGPIKGNCMNEGIVHIDGSFAEVVEPDHRASKWESSENYVEKPSLEGLTHGSTGRKLFNRDDDENFDRCTQVRSKNKISGPPPDMPFQRVKSVSESKSRDIGQKSKDVSLFGNDDSVDRDNDVLESSQKMYPFKKRKFFNQTSSSASDRGSHCHGIFDSSDTRVDGANHGAAIEASSSIAGQQVHPRSRDCNVKLSIKSFKVPELFIDIPETATIGSLKRTVMEAVTAILGDELHVGILLQGKKVRDDNKTLIQTGISQDDKHHRLGFMLEPRHTQIAPSSYNESACFQTTSSHRDISRKSTSLMLQQRTYNVSQEHSLIKFESCGERDLNVVPSVADTSPNSTMSKCRALVAVPAINMEALAVIPFRRKPGNTDFVQRRIRRPFSVSEVEALVQAVEKLGTGRWRDVKQCAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWSQPQSKHQVKPL 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0316 1093 PANTHER TELOMERIC REPEAT BINDING PROTEIN 479 590 IPR031105 -
Dere12g0316 1093 Gene3D - 991 1092 - -
Dere12g0316 1093 MobiDBLite consensus disorder prediction 663 732 - -
Dere12g0316 1093 SUPERFAMILY Homeodomain-like 1002 1083 IPR009057 -
Dere12g0316 1093 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 997 1055 IPR017930 -
Dere12g0316 1093 SMART sant 1000 1053 IPR001005 -
Dere12g0316 1093 CDD SANT_TRF 1002 1052 - -
Dere12g0316 1093 SUPERFAMILY Ubiquitin-like 808 894 IPR029071 -
Dere12g0316 1093 ProSiteProfiles Myb-like domain profile. 996 1051 IPR001005 -
Dere12g0316 1093 MobiDBLite consensus disorder prediction 674 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0316 Dere-ChrDere12 5476054 5489792 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0316 12 5476054 5489792 Dere05g1013 05 16340544 16343787 ECH
Dere12g0316 12 5476054 5489792 Dere12g0316 12 5476054 5489792 ECH