Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0187 ATGTCCACCATGAGGGAGGAGAGAGCCGTAGTTGCATGGCGCAAAATTCCCTCTCTCAACAGTTCTCATTGCGCCATCAACGACCGCGAGCCGCTCTGGAAGAAGAAGACAACTAGCGTCACTCTCACTCTCAGTGGCACTCCTTGTAAATTCGCATGCATTTCGGTGGCAGAAAGGAAAATGGATAAAGGGTTCTCACCCACGCCGGCTCAGCTCTTGAAGCATCCGCTTGCTGTAATCGCACTCGTGCCCAAGGACGCAGCGCTCTTCCTGGCCGGCGCCATTGCTGGCGCCGCTGCCAAGACCGTTACGGCTCCGCTCGACCGTATCAAAATTCTTATGCAGACTCATGGGGTTCGAGTTGGGCAAGAAAGTGCTAAAAGGGCTATTACTTTCATTGAGGCTGTAACAATTATAGGGAAGGAAGAAGGAATTAAAGGTTACTGGAAGGGGAACCTCCCCCAGGTTATTCGGGTGATACCTTATAGTGCTGTCCAGCTTTTTGCTTACGAACTTTATAAGAAAATGTTCAGAGGAAAGGATGGTGAGCTCTCTGTTATTGGAAGACTTGCAGCGGGTGCTTTTGCTGGCATGACATCCACTTTTATAACTTACCCATTAGATGTCCTGAGATTAAGATTAGCAGTTGAACCGGGTTATCGAACCATGTCAGAGGTTGCCTTTAGCATGCTAAGAGAGGAAGGTTTGGCATCATTCTATTACGGCCTTGGACCTTCTCTTATTGGAATAGCTCCTTATATTGCAGTGAACTTCTGTGTTTTTGACTTATTAAAGAAGTCTTTGCCAGAGAAGTATCAAAAGAGAACTGAAACATCTCTCATAACAGCTGTGCTTTCTGCATCTCTTGCCACAATTACATGCTATCCTCTGGACACTGTGCGAAGGCAGATGCAATTGAAGGGTACACCTTATAAGACAGTTTTAGAAGCCCTTTCAGGTATTGTGGAACGGGATGGAGTTATTGGCTTGTACCGGGGCTTTCTACCCAATGCTTTGAAAACCCTACCTACCAGCAGCATCAGGCTTACCATATATGACTTTGTTAAACGCGTAATTGCAGCTAGTGAGAAAGAGTTTCAAATAATTACAGAGGAAAATCGCCAGAAACAACTACACAAATAA 1143 0.4593 MSTMREERAVVAWRKIPSLNSSHCAINDREPLWKKKTTSVTLTLSGTPCKFACISVAERKMDKGFSPTPAQLLKHPLAVIALVPKDAALFLAGAIAGAAAKTVTAPLDRIKILMQTHGVRVGQESAKRAITFIEAVTIIGKEEGIKGYWKGNLPQVIRVIPYSAVQLFAYELYKKMFRGKDGELSVIGRLAAGAFAGMTSTFITYPLDVLRLRLAVEPGYRTMSEVAFSMLREEGLASFYYGLGPSLIGIAPYIAVNFCVFDLLKKSLPEKYQKRTETSLITAVLSASLATITCYPLDTVRRQMQLKGTPYKTVLEALSGIVERDGVIGLYRGFLPNALKTLPTSSIRLTIYDFVKRVIAASEKEFQIITEENRQKQLHK 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0187 380 Pfam Mitochondrial carrier protein 278 360 IPR018108 -
Dere12g0187 380 Pfam Mitochondrial carrier protein 89 179 IPR018108 -
Dere12g0187 380 Pfam Mitochondrial carrier protein 183 270 IPR018108 -
Dere12g0187 380 ProSiteProfiles Solute carrier (Solcar) repeat profile. 184 267 IPR018108 -
Dere12g0187 380 SUPERFAMILY Mitochondrial carrier 87 355 IPR023395 -
Dere12g0187 380 PRINTS Mitochondrial carrier protein signature 283 305 IPR002067 GO:0055085
Dere12g0187 380 PRINTS Mitochondrial carrier protein signature 89 102 IPR002067 GO:0055085
Dere12g0187 380 PRINTS Mitochondrial carrier protein signature 199 217 IPR002067 GO:0055085
Dere12g0187 380 PRINTS Mitochondrial carrier protein signature 240 258 IPR002067 GO:0055085
Dere12g0187 380 PRINTS Mitochondrial carrier protein signature 151 171 IPR002067 GO:0055085
Dere12g0187 380 PRINTS Mitochondrial carrier protein signature 102 116 IPR002067 GO:0055085
Dere12g0187 380 Gene3D Mitochondrial carrier domain 86 365 IPR023395 -
Dere12g0187 380 ProSiteProfiles Solute carrier (Solcar) repeat profile. 84 176 IPR018108 -
Dere12g0187 380 PANTHER SOLUTE CARRIER FAMILY 25 76 359 - -
Dere12g0187 380 FunFam Envelope ADP,ATP carrier protein 86 364 - -
Dere12g0187 380 ProSiteProfiles Solute carrier (Solcar) repeat profile. 274 358 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0187 Dere-ChrDere12 3298331 3303767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0187 4 377 Organic Solute Cotransporters AT3G51870 68.766 0.0 523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g0186 11 3072197 3076909 Dere12g0187 12 3298331 3303767 CCT
Dere12g0187 12 3298331 3303767 Dere12g0187 12 3298331 3303767 ECH