Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0113 ATGTCCGTCCAAAACGCACCGTTCCCAGACCTCCCAGACGCATCCCCAAAACCGTACAAGAAAAGCTTCGTGACCTCTCTAATGGAAGCAGCCACATTCCGTACACCGTCGTTTAAGGAAGACACCTACTTCGTTTCCCACCTGAAATCCTCCGAGAAAAAGGCCCTTCAAGAGCTCAAGAACAAGCTGGCAGCCTCCGAGGTTTCGGATTTGTCTATGTGGGGTATTCCTCTGCTCGGTGGTGACGACAGAGCAGACGTCGTACTGTTGAAATTTCTTCGAGCGAGGGACTTCAGGGTGGGTGACTCGCTCAACATGCTTCTGAAATGCTTGGCTTGGAGGAAAGAGTTCGGAGCGGAGGGCGTCGTAGAGGAGGACCTGGGATTCAAAGAGCTCGAAGGGGTTATCGCCTACATGCAGGGGTATGATAAAGAGGGACATCCTGTTTGCTACAATGCGTATGGAGTATTCAGAGACAAAGAAATGTATGAGCGAATTTTTGGAGACGAAGAGAAGCTTAAGAAATTCTTGAGATGGAGGGTTCAAGTTCTTGAAAGAGGAATCAAGCTTCTTCATTTCAAGCCAGGTGGGGTTAATTCTCTGATTCAGGTTACCGATTTGAAAGACATGCCCAAGAGGGAGCTCAGGGTAGCTTCGAATCAGATCCTTTCACTGTTCCAAGACAATTATCCCGAAATGGTGGCTCGTAAGATCTTTATCAACGTCCCCTGGTACTTCAGCATGTTGTATTCGATGTTCAGTCCATTCTTGACCCAAAGGACTAAGAGCAAATTTGTGATCTCCAAGGAAGGAAATGCTGCAGAGACACTCTACAAATTCATAAGGCCTGAGGATATTCCTGTTCGGTATGGAGGACTGTGTCGGCCAAGTGATTTGCAGAATGGTCCCCCAAAACCTGCTTCTGAGTTCACTGTCAAAGGAGGAGAGAAGGTGAACATCCAAATTGAAGGAATTGAGGCTGGATCAACAATAACATGGGACATTGTGGTGGGAGGGTGGGACTTAGAGTACAGTGCAGAGTTTGTCCCAAACGCAGAAGGAAGCTACACCATAGCAGTAGAGAAGCCAAGGAAGATCGGAGCATCAGAGGAAGCAATCCACAACTCTTTCACAACAAAAGAAGCAGGAAAGATGGTGCTGTCTGTTGACAACTTCGCTTCCAGGAAGAAGAAAGTCGCTGCATATCGCTACGTTGTCCGCAAATGCAGCAACGTCTGA 1239 0.477 MSVQNAPFPDLPDASPKPYKKSFVTSLMEAATFRTPSFKEDTYFVSHLKSSEKKALQELKNKLAASEVSDLSMWGIPLLGGDDRADVVLLKFLRARDFRVGDSLNMLLKCLAWRKEFGAEGVVEEDLGFKELEGVIAYMQGYDKEGHPVCYNAYGVFRDKEMYERIFGDEEKLKKFLRWRVQVLERGIKLLHFKPGGVNSLIQVTDLKDMPKRELRVASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNAAETLYKFIRPEDIPVRYGGLCRPSDLQNGPPKPASEFTVKGGEKVNIQIEGIEAGSTITWDIVVGGWDLEYSAEFVPNAEGSYTIAVEKPRKIGASEEAIHNSFTTKEAGKMVLSVDNFASRKKKVAAYRYVVRKCSNV 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0113 412 SUPERFAMILY CRAL/TRIO N-terminal domain 39 125 IPR036273 -
Dere12g0113 412 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 309 407 IPR036598 -
Dere12g0113 412 Coils Coil 49 69 - -
Dere12g0113 412 SMART sec14_4 131 295 IPR001251 -
Dere12g0113 412 FunFam SEC14 cytosolic factor family protein 133 308 - -
Dere12g0113 412 SMART CRAL_TRIO_N_2 85 110 IPR011074 -
Dere12g0113 412 Gene3D GOLD domain 305 406 - -
Dere12g0113 412 Gene3D - 128 304 IPR036865 -
Dere12g0113 412 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 124 298 IPR001251 -
Dere12g0113 412 Pfam CRAL/TRIO, N-terminal domain 55 108 IPR011074 -
Dere12g0113 412 FunFam SEC14 cytosolic factor family protein 44 116 - -
Dere12g0113 412 Pfam CRAL/TRIO domain 133 292 IPR001251 -
Dere12g0113 412 Gene3D - 45 116 - -
Dere12g0113 412 ProSiteProfiles GOLD domain profile. 292 408 IPR009038 -
Dere12g0113 412 SUPERFAMILY CRAL/TRIO domain 130 295 IPR036865 -
Dere12g0113 412 PANTHER PATELLIN-1 32 408 IPR044834 GO:0008289
Dere12g0113 412 CDD SEC14 129 293 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0113 Dere-ChrDere12 1411368 1413577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0113 89 287 Acyl Lipid Metabolism Gene Families AT1G55840 28.502 1.99e-11 62.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0113 12 1411368 1413577 Dere11g0099 11 1576441 1579105 CCT
Dere12g0113 12 1411368 1413577 Dere12g0113 12 1411368 1413577 ECH