Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0020 ATGTCTGGTTTGTACAATTCCAACTTCTCACCAGCTAGAGCGGCTTCCCCTCAGATTAGGAGCACCCCGGACGTCGATAGTCAGTACTTGTCGGAGTTGCTAGCAGAGCATCAGAAGCTTGGACCCTTCATTCAAGTCCTTCCGATATGCAGTCGGTTGTTAAATCAAGAAATATTAAGAGTTTCTGGAATGATGTCCAACCAAAGTTTTGGTGACTTTGACAGACTGCGGCATAGAAGCCCCAGTCCTATGGCTTCTTCAAATCTCATGTCAAATGTCACTGGAACAGGATTGGGTGGCTGGAATACTCTTCCTCAGGAGAGATTATGTGGACCCACTGGAATGACAATGGACTGGCAAGGAGCACCTGCAAGTCCTAGTTCATACACTGTTAAGAGGATCTTGCGATTGGAAATTCCAGTAGATACATACCCCAATTTCAACTTTGTTGGAAGACTTCTGGGACCTAGAGGCAACTCTCTGAAACGTGTAGAAGTTACTACAGGCTGCCGTGTGTATATTAGAGGAAAAGGATCAATAAAGGATCCAGACAAGGAAGAGAAATTAAGAGGAAGACCAGGATATGAGCATCTCAATGAACCACTACACATTTTAATTGAGGCTGATTTACCTGCTAGTATTGTGGACATGAGGCTCAGACAGGCACAGGAAATTATAGAAGAATTGCTCAAACCTGTGGATGAGTCTCATGACTATATTAAGAGGCAGCAGTTGCGTGAATTAGCCATGCTGAATTCAAATTTCCGAGAAGAGAGTCCCGGGCCGAGTGGTAGTGTATCTCCGTTCAACTCTAGTGGGATGAAACGTGCAAAAACAGTCTCACTGGTTTCTGACCGGAAAGTCCGCTTCACTCTCGCTGCTCGCTTGTTATTAGCGTTAAGGTTCCTGAGTCTCGGAAGGGTTTCAAGGTTTCAGCTTCCGAATTTCCTACTCACACTCGCACACATTCATCTTCTCCTTTTGCTATTTCACACTGCCATTCCTCATCTATTACCTGCAGATCGAGGATTAAGCTGA 1038 0.4499 MSGLYNSNFSPARAASPQIRSTPDVDSQYLSELLAEHQKLGPFIQVLPICSRLLNQEILRVSGMMSNQSFGDFDRLRHRSPSPMASSNLMSNVTGTGLGGWNTLPQERLCGPTGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPASIVDMRLRQAQEIIEELLKPVDESHDYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTVSLVSDRKVRFTLAARLLLALRFLSLGRVSRFQLPNFLLTLAHIHLLLLLFHTAIPHLLPADRGLS 345
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0020 345 PANTHER RNA-BINDING PROTEIN RELATED 18 275 IPR045071 -
Dere12g0020 345 SMART kh_6 131 231 IPR004087 GO:0003676
Dere12g0020 345 Gene3D K Homology domain, type 1 19 262 IPR036612 GO:0003723
Dere12g0020 345 MobiDBLite consensus disorder prediction 1 22 - -
Dere12g0020 345 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 138 256 IPR036612 GO:0003723
Dere12g0020 345 Pfam Homodimerisation region of STAR domain protein 23 72 IPR032377 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere12g0020 Dere-ChrDere12 219112 228317 Dispersed/Wgd
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0020 12 219112 228317 Dere11g0033 11 467501 479566 CCT
Dere12g0020 12 219112 228317 Dere12g0020 12 219112 228317 ECH