Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0033 ATGGCATGGAGAACACACAAGTGGTTTGTATGGATATTACTGGAGATGGATTTAAGAGCTTATATAGCTATGATTTGTTGGTTTTTATGGCAATGTGGTTTTCTATTTGAGGGGGACGAAAGTGATCCTATATTGGCCACTAAATTAGCTCTGAATGCTGTTGAGGAGTTCTGGTCAGTTAATAGATTTCATGACAACATTGGGAACTTGAGGGAATCCATACAGCGGGAATCAATTAATTGGAGAGCTCCTGAGCCTCAGCTTCAGCCTCAATCCGGATATGACCTGTCCGAATCCTGCCGGAGACTTGAGGAGGCAAACTTAGGGATATTCCTGTTTCATGGTAGATATTTCAAGGACGCTTCAGAATTTTCTCAAATTTATAGAAAGCTAAAAGAGAAAGCCATGTCAGGTTTGTATAATCCCAACTTCTCCCCTGCTAGAGCTGCTTCTCCTCAGATTAGAAGCAACACAGAAACCGAAAGTCAGTATTTGTCGGAGTTGCTAGCAGAGCATCAGAAGCTTGGACCCTTCATGCAAGTCCTTCCGATATGCAGTCGGCTGTTAAATCAAGAAATATTAAGGGTTTCTGGAATGCTGTCGAACCAAGGTTTTGGTGACTTTGACAGACTGCGGAATAGAAGCCCTAGTCCTATGGCTTCTTCAAACCTCATGTCAAATGTTGCTGGGACAGGTTTGGGTGGCTGGAATAATCTTCCTTCGGAGAGATTGTGTGGACTCCCTGGAATAGCAATGGACTGGCAAGGTGCTCCTGCAAGTCCTAGTTCATGCACTGTAAAGAGGATCTTGCGCTTGGAAATTCCAGTAGATACATACCCGAATTTCAATTTTGTTGGAAGACTTCTTGGACCTAGAGGCAATTCTCTGAAACGGGTAGAAGCTACTACAGGTTGCCGTGTGTATATTAGAGGAAAGGGATCAATAAAGGATCCAGACAAGGAAGAGAAATTACGAGGAAGACCAGGCTATGAGCATCTCAATGAACCACTGCATATTCTTATTGAGGCTGATTTACCTGCAAATGTTGTTGATTTACGGCTCAGACAGGCACAGGAAATTATAGAAGAATTGCTCAAACCTGTGGATGAGTCACAGGACTATATCAAGAGGCAGCAGTTGCGTGAATTAGCTATGCTGAATTCAAACTTCAGAGAGGAGAGTCCTGGACCAAGTGGTGGCAGTGTATCTCCATTCAATTCTAGTGGAATGAAAAGAGCAAAAACTGGACGCTAA 1254 0.4322 MAWRTHKWFVWILLEMDLRAYIAMICWFLWQCGFLFEGDESDPILATKLALNAVEEFWSVNRFHDNIGNLRESIQRESINWRAPEPQLQPQSGYDLSESCRRLEEANLGIFLFHGRYFKDASEFSQIYRKLKEKAMSGLYNPNFSPARAASPQIRSNTETESQYLSELLAEHQKLGPFMQVLPICSRLLNQEILRVSGMLSNQGFGDFDRLRNRSPSPMASSNLMSNVAGTGLGGWNNLPSERLCGLPGIAMDWQGAPASPSSCTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDLRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFREESPGPSGGSVSPFNSSGMKRAKTGR 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0033 417 SMART kh_6 266 366 IPR004087 GO:0003676
Dere11g0033 417 MobiDBLite consensus disorder prediction 391 417 - -
Dere11g0033 417 Pfam KH domain 283 316 IPR004088 GO:0003723
Dere11g0033 417 MobiDBLite consensus disorder prediction 390 417 - -
Dere11g0033 417 PANTHER RNA-BINDING PROTEIN RELATED 156 409 IPR045071 -
Dere11g0033 417 Gene3D K Homology domain, type 1 154 397 IPR036612 GO:0003723
Dere11g0033 417 CDD KH-I_SPIN1_like 267 367 - -
Dere11g0033 417 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 273 391 IPR036612 GO:0003723
Dere11g0033 417 ProSiteProfiles Type-1 KH domain profile. 283 340 - -
Dere11g0033 417 Pfam Homodimerisation region of STAR domain protein 158 207 IPR032377 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0033 Dere-ChrDere11 467501 479566 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0020 12 219112 228317 Dere11g0033 11 467501 479566 CCT