Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1739 ATGTGGCGAAGACTTGTCTCTTCTCACCTCAAATCCCTAGCTACTATCGCTGCTTCTCCTTCCCGATCTGCTCCCACCGTCACCCGATTCACTGCCTCCACTCCTTCCTGTCTTTCTCCATCGTCTTATTTGCTCAGCCGCCACTTCAGCACGGAGTCTGGGGATAATGCGATCAAAAAGAAGGTTGAGGATATAATGCCAATTGCTACTGGGCATGAGCGCGAGGAGCTCGAGGCTGAGCTCGAGGGAAGGAAGCTTCTTGATATAGACTATCCTGAAGGTCCCTTCGGCACAAAGGAAGCACCTGCTGTTATCAAGTCTTACTATGACAAAAGAATAGTTGGATGCCCGGGAGGTGAAGGCGAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTCATGAATGTCCAGTGTGCTCGCAGTATTTTGTTCTTGAAGTGGTGGGACCTGGTGGACCTCCTTATGGACACAGCGATGACGATGAGGATCATCACCATTGA 513 0.5049 MWRRLVSSHLKSLATIAASPSRSAPTVTRFTASTPSCLSPSSYLLSRHFSTESGDNAIKKKVEDIMPIATGHEREELEAELEGRKLLDIDYPEGPFGTKEAPAVIKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPGGPPYGHSDDDEDHHH 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1739 170 PANTHER CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL 1 169 IPR002124 GO:0005740|GO:0005751|GO:0006123
Dere11g1739 170 CDD Cyt_c_Oxidase_Vb 57 154 IPR002124 GO:0005740|GO:0005751|GO:0006123
Dere11g1739 170 Gene3D Cytochrome c oxidase, subunit Vb 58 152 IPR036972 GO:0005740|GO:0005751|GO:0006123
Dere11g1739 170 SUPERFAMILY Rubredoxin-like 58 155 - -
Dere11g1739 170 Pfam Cytochrome c oxidase subunit Vb 68 154 IPR002124 GO:0005740|GO:0005751|GO:0006123
Dere11g1739 170 FunFam Cytochrome c oxidase subunit Vb 58 152 - -
Dere11g1739 170 ProSiteProfiles Cytochrome c oxidase subunit Vb, zinc binding domain profile. 57 156 IPR002124 GO:0005740|GO:0005751|GO:0006123
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1739 Dere-ChrDere11 31185613 31189158 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1638 12 28880818 28883884 Dere11g1739 11 31185613 31189158 CCT
Dere11g1739 11 31185613 31189158 Dere12g1638 12 28880818 28883884 ECH
Dere11g1739 11 31185613 31189158 Dere11g1739 11 31185613 31189158 ECH