Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0475 ATGACTGAAATACAAGATCTACGGGCAACACAAGATTCCTACGTCTTATTCAAGGAGTCAAGCGGCGACGGCCGAAACAAGGAAAGGAGAAAGGATAGAAATGGACTAGCTTCTCTTCCTGAAACTGAAGGCAAAGAGGAAGAGGTTGAAAGAGGTATGTACAGAGAGCGAGGAGCTGTTGGGTCCAAATCGGAGGTGGGTTCCGTTGATCGTAAGCGAATCAACGACGTTCTCGACAAGCAACTCGAGCGATCTTCACCGTCCACTTCCTGGGCAATCAACGGCAAGGATAGGTCGGCGCAATCTGTGTTGACGGGCAAACCACCTGCTGATCACAGGGATTCTCGCTCTGTCTCCATCCCCAAGAACTCTAACGCTTCAGATGAGGAATCTGAAACAGACAGTGAAGAGTCAGATGTTAGTGGTTCTGATGGAGATGACACATCTTGGATTTCATGGTTCTGCAATCTGAGAGGAAATGAATTCTTTTGTGAGGTTGATGATGATTACATCCAAGATGACTTCAACCTCTGTGGACTAAGCAGTCAAGTGCCTTACTATGATTATGCCCTAGATTTAATTTTGGATGTTGAATCATCCCACGGTGACATGTTCACAGAGGAACAAAATGAGTTGATTGAATCAGCAGCAGAGATGCTTTATGGTCTGATTCATGCCCGGTACATATTGACGGGCAAAGGAATGGCAGCTATGCTGGACAAGTATAAAAACTATGACTTCGGGAGATGCCCAAGAGTTTACTGCTCTGGACAACCCTGTCTTCCAGTTGGTCAGTCAGACATTCCTAGATCAAGTACTGTGAAAATATACTGCCCTAGGTGTGAAGATATTTACTATCCTCGGTCGAAGTATCAAGGCAACATTGATGGAGCTTATTTTGGAACTACATTTCCACATCTTTTCCTGATGACTTACGGACAGCTGAAGCCACAGAAACCTTTGCAGAGTTATGTGCCAAGAGTCTTTGGCTTCAAAATTCATAAGCCTTGA 1011 0.4491 MTEIQDLRATQDSYVLFKESSGDGRNKERRKDRNGLASLPETEGKEEEVERGMYRERGAVGSKSEVGSVDRKRINDVLDKQLERSSPSTSWAINGKDRSAQSVLTGKPPADHRDSRSVSIPKNSNASDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYILTGKGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPLQSYVPRVFGFKIHKP 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0475 336 PANTHER CASEIN KINASE II SUBUNIT BETA 128 335 IPR000704 GO:0005956|GO:0019887
Dere09g0475 336 Pfam Casein kinase II regulatory subunit 149 332 IPR000704 GO:0005956|GO:0019887
Dere09g0475 336 SMART CK_II_beta_2 149 332 IPR000704 GO:0005956|GO:0019887
Dere09g0475 336 FunFam Casein kinase II subunit beta 142 246 - -
Dere09g0475 336 MobiDBLite consensus disorder prediction 1 145 - -
Dere09g0475 336 MobiDBLite consensus disorder prediction 1 17 - -
Dere09g0475 336 ProSitePatterns Casein kinase II regulatory subunit signature. 250 281 IPR000704 GO:0005956|GO:0019887
Dere09g0475 336 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 142 246 IPR016149 GO:0005956|GO:0019887
Dere09g0475 336 MobiDBLite consensus disorder prediction 66 80 - -
Dere09g0475 336 SUPERFAMILY Casein kinase II beta subunit 147 335 IPR035991 GO:0005956|GO:0019887
Dere09g0475 336 PRINTS Casein kinase II regulatory subunit family signature 149 165 IPR000704 GO:0005956|GO:0019887
Dere09g0475 336 PRINTS Casein kinase II regulatory subunit family signature 166 180 IPR000704 GO:0005956|GO:0019887
Dere09g0475 336 PRINTS Casein kinase II regulatory subunit family signature 268 289 IPR000704 GO:0005956|GO:0019887
Dere09g0475 336 PRINTS Casein kinase II regulatory subunit family signature 296 313 IPR000704 GO:0005956|GO:0019887
Dere09g0475 336 PRINTS Casein kinase II regulatory subunit family signature 221 242 IPR000704 GO:0005956|GO:0019887
Dere09g0475 336 PRINTS Casein kinase II regulatory subunit family signature 246 267 IPR000704 GO:0005956|GO:0019887
Dere09g0475 336 Gene3D - 247 321 - -
Dere09g0475 336 FunFam Casein kinase II subunit beta 247 321 - -
Dere09g0475 336 MobiDBLite consensus disorder prediction 21 58 - -
Dere09g0475 336 MobiDBLite consensus disorder prediction 81 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0475 Dere-ChrDere09 7581144 7587762 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0475 09 7581144 7587762 Dere13g0299 13 4162387 4165615 CCT
Dere13g0297 13 4150387 4154988 Dere09g0475 09 7581144 7587762 CCT
Dere09g0475 09 7581144 7587762 Dere09g0475 09 7581144 7587762 ECH