Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1185 ATGGCAACGAATTCTTCTAACGGAGATTACCAAACAACAAAAACAACAACGACCTCAAAACCGCCTCCCTTGCCCTCTCCCTTGCGCTTTTCCAAGTTCTTTCAGTCGAATATGAGAATTCTGGTTACTGGAGGAGCTGGATTCATTGGCTCTCACTTAGTTGACAGATTAATGCAGAATGAAAAAAATGAGGTTATTGTTGCTGACAACTTCTTCACTGGATCCAAGGACAACCTCAGAAAATGGATTGGTCATCCTAGATTTGAACTAATCCGTCATGATGTGACGGAGCAATTGTTTATTGAGGTTGATCAGATCTACCATCTTGCTTGCCCTGCTTCTCCAATATTCTACAAATACAATCCCGTGAAGACCATAAAGACAAATGTGATCGGAACACTGAACATGCTCGGGCTTGCAAAGCGAGTGGGAGCAAGGATTTTGTTAACATCTACTTCCGAAGTATATGGTGATCCTCTTGTGCATCCCCAACCTGAGAGTTATTGGGGCAATGTGAACCCTATTGGCGTTCGAAGTTGTTATGATGAGGGGAAGCGTGTGGCAGAAACTTTAATGTTTGATTATCATAGGCAGCACGGAATAGAAATACGCATTGCCAGAATCTTCAACACATATGGACCACGCATGAATATTGATGATGGGCGAGTTGTGAGCAACTTCATTGCTCAAGCACTTCGTGGTGAACCCCTGACAGTCCAACTTCCCGGAACCCAAACTCGCAGTTTCTGCTATGTCTCTGACATGGTTGATGGCCTTATACGTCTGATGGAAGGAGAACACACTGGTCCAATCAACATTGGGAATCCAGGTGAATTTACAATGATTGAACTTGCAGAGACAGTGAAGGAGCTTATTGATCCAGGCGTGGAGATAAATATGGTGGAGAACACTCCTGATGATCCTCGACAGAGAAAACCAGACATAACAAAAGCAAAGGAATTGTTAGGATGGGAACCAAAGGTGAAGCTGCGAGATGGTCTTCCTCTAATGGAAGACGACTTCCGTCTGAGGCTTGGGGTTGCCAAAAAGAACTGA 1056 0.4413 MATNSSNGDYQTTKTTTTSKPPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMQNEKNEVIVADNFFTGSKDNLRKWIGHPRFELIRHDVTEQLFIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQLPGTQTRSFCYVSDMVDGLIRLMEGEHTGPINIGNPGEFTMIELAETVKELIDPGVEINMVENTPDDPRQRKPDITKAKELLGWEPKVKLRDGLPLMEDDFRLRLGVAKKN 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1185 351 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 24 346 IPR044516 GO:0042732|GO:0048040|GO:0070403
Dere08g1185 351 CDD UGD_SDR_e 38 342 - -
Dere08g1185 351 FunFam UDP-glucuronic acid decarboxylase 6 37 346 - -
Dere08g1185 351 Pfam GDP-mannose 4,6 dehydratase 41 335 IPR016040 -
Dere08g1185 351 MobiDBLite consensus disorder prediction 1 25 - -
Dere08g1185 351 Gene3D - 164 345 - -
Dere08g1185 351 Gene3D - 35 163 - -
Dere08g1185 351 MobiDBLite consensus disorder prediction 1 19 - -
Dere08g1185 351 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 33 342 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1185 Dere-ChrDere08 16019233 16022093 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1185 35 334 Miscellaneous Gene Families AT1G02000 24.096 3.27e-16 77.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1185 08 16019233 16022093 Dere07g0950 07 13047550 13050380 CCT
Dere08g1185 08 16019233 16022093 Dere08g1185 08 16019233 16022093 ECH