Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1159 ATGGAGTTCCTCACTTTACTGTGTGTTGTTCCAATACTGTACTTGTGCTTCATGGTGTGGAAGCTGTTTGATGAGAGAAAAAACCAGGAGTGCTTCATTGTAGATTACCAGTGCTATAAGCCACCAAATGATAGAAAGCTTGGCACTGAGTTTTGCGGTAAGGTCATCACGAGGAATCCTTACTTGGGCCTTGACGAGTACAAGTTCCTCCTCAAAGCAATTGTGAGCTCCGGCATTGGCGAGCAAACTTACGCCCCAGAAACCGTCTTCTTGGGCCGCGAGGCCCAGCCCACTTTGAAGGATGCCGAGTCTGAGATGGACGAGTTCTTCCGCGACGCCATAGCCAAGCTCTTGTACAGGTCTCGCCTTTCTCCCTCAGACATCGATGTTCTCGTCGTCAATGTCTCCATGTTCGCGGCTCTTCCTTCCTTGTCTTCTCACATCATTAATTATTACAAAATGAGGGAGGACATTAAGGTTTACAATCTCACGGGCATGGGTTGTAGCGCGAGCCTTATTTCTCTGGACTTGATTAAGAGTATTTTCAAGTCCCAGAAGAACAAGTACGCTCTTTTGGTGACTTCCGAGTCTCTGAGTCCAAATTGGTATAATGGTAACGACAGGTCGATGATTCTCACGAACTGTTTGTTCCGGACTGGTGGGTGTGCTATTCTGTTGACGAACAAAAGGAGTTTAAAGCACAAAGCAATGTTGAAGTTGAAGTGCCTGGTGAGAACTCATCATGGGGCTAAGGATGATGCATTTGGGTGTTGCATGCAGAAGGAAGATGAGGAAGGAAGGCTTGGGTTTCACCTCGGGAAATCTCTCCCAAAAGCAGCTACAGGGGCCTTTGTTGATAATTTAAGGGTAATATCACCCAAGATTTTGCCCTTAAGAGAGTTAATGAGGTTCATGGCTGTGACCCTCATTAAGATGCTCAACACAAACAGTTCTACCAAGTCATCATCCTCAGGCGGAGGGATTACCAGATCGCCATTGAATTTTAAAACTGGGGTTGATCACTTCTGTATACACCCGGGAGGAAAGGCTGTGATTGAAGGGGTTGGAAAGAGCTTGGATCTGAGTGAGTATGATCTTGAGCCAGCGAGGATGACACTACACCGTTTTGGGAACACGTCAGCCAGTAGCCTCTGGTATGTGTTGGGGTACATGGAGGCGAAGAAGAGGCTAAAGAAAGGTGAGAGAATATTGATGATAAGCTTCGGGGCTGGCTTTAAATGCAACAGTTGTTTGTGGGAGGTAATGAGGGATCTTGGGGACAAGAATGTGTGGGAAGACTGCATTGATGAGTACCCACCAAAGTGCTTGGCCAACCCTTTCTTGGAGAAGTATGGTTGGATCCAAAAACTCGAGGATCTAAACAACTTCCAAATGCCAGATTTTCTCAACAAAGGTTAA 1419 0.4637 MEFLTLLCVVPILYLCFMVWKLFDERKNQECFIVDYQCYKPPNDRKLGTEFCGKVITRNPYLGLDEYKFLLKAIVSSGIGEQTYAPETVFLGREAQPTLKDAESEMDEFFRDAIAKLLYRSRLSPSDIDVLVVNVSMFAALPSLSSHIINYYKMREDIKVYNLTGMGCSASLISLDLIKSIFKSQKNKYALLVTSESLSPNWYNGNDRSMILTNCLFRTGGCAILLTNKRSLKHKAMLKLKCLVRTHHGAKDDAFGCCMQKEDEEGRLGFHLGKSLPKAATGAFVDNLRVISPKILPLRELMRFMAVTLIKMLNTNSSTKSSSSGGGITRSPLNFKTGVDHFCIHPGGKAVIEGVGKSLDLSEYDLEPARMTLHRFGNTSASSLWYVLGYMEAKKRLKKGERILMISFGAGFKCNSCLWEVMRDLGDKNVWEDCIDEYPPKCLANPFLEKYGWIQKLEDLNNFQMPDFLNKG 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1159 472 CDD CHS_like 13 419 - -
Dere08g1159 472 Pfam FAE1/Type III polyketide synthase-like protein 25 310 IPR013601 GO:0006633|GO:0016020|GO:0016747
Dere08g1159 472 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 453 IPR012392 GO:0006633|GO:0016020|GO:0016747
Dere08g1159 472 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 339 420 IPR013747 -
Dere08g1159 472 PANTHER 3-KETOACYL-COA SYNTHASE 13 440 IPR012392 GO:0006633|GO:0016020|GO:0016747
Dere08g1159 472 SUPERFAMILY Thiolase-like 18 231 IPR016039 GO:0016746
Dere08g1159 472 Gene3D - 74 421 IPR016039 GO:0016746
Dere08g1159 472 SUPERFAMILY Thiolase-like 243 422 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1159 Dere-ChrDere08 15589165 15590583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1159 19 467 Acyl Lipid Metabolism Gene Families AT2G28630 66.447 0.0 650
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1159 08 15589165 15590583 Dere07g0914 07 12699689 12701101 CCT
Dere08g1159 08 15589165 15590583 Dere08g1159 08 15589165 15590583 ECH