Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1077 ATGGTTGAATTTAAAGAGGCTAGGAACTCGTATAAACGCAGTCCTGGGTGGGGAAAGATCGTTCCCAAGCTTGATGGTGATGGCCTTTCCAGCCTCAGCAGTAGTGGTTATACCAGTGAGAGGGGTAGCAACACTATAACAAGTGGGTCTACAATGGACAAGCACGTTCAAAATGAAATACAAGAGATAAGGATTGATAATGTTGTCGATGGAATCTCTGACTCACAGACGTCATGGCTTCCTGCTAATTGGCATGGGGATGAGGCCAACACATACTTGATGTTGCTAACTACTAGTTCAGATGCCTTTTATCATCTTAAGGATTGCAGGATATGTATTGAAATGGTCCTTTTGAAGTCAATTGTTCTTAGTGAGGTTCAGAGATCCTTGCTAGATGGTGGAATGCATGTTGAGGATCTCCCTGTTGATCCGTTACCCCGTCCTGGATCATCGCCTCATTTGGGGCAGCCCAAACTCTCAACAGATTTTTTGAAAGACCGAAGCAACCTTATTTTGGAATTGGTGGTTCTGCACGACAAAGAGAAAAAGTTCGGACCTTTATTGTCCCGGGCTGACCCAAACCAGTTGATCCGATCTGGCTCCGGCTACCATTTCCCCGAGCGAGCCACTTTCTTGAGGGAGAGAAAGTGCGGAGTTCACGGAGCAGAAATGTACAAGAACCAGCTTCAAGAGCTGGCCCAGCGGAGCTGCTTCAACCTCCCTTCCTACACGTGCATTCGGGAAGGTCCCGATCACGCGCCGAGGTTCAAGGCCACCGTTAATTTCAACGGCGAGATCTTCGAGAGCCCTCACTACTGCTCTACTCTCCGCCAAGCCGAGCACTCTGCCGCTGAGGTTGCTCTCAATTCCCTCTCCAACCGTGGCCCTTCACACTCCCTTGCAGCTAGGATTCTGGACGAGACAGGAGTCTACAAGAATCTCTTACAGGAAATTGCGCAAAGGGTAGGGGCTCCATTGCCTCAATACATAACATTCAGGTCAGGCCTAGGACATTTACCCGTTTTTACTGGAACAGTAGAGTTGGCTGGAATCACATTTACTGGTGAACCTGCCAAGAATAAGAAGCAAGCAGAAAAAAATGCAGCGATGGCAGCTTGGTCATCTCTAAAACAGTTGGCTAAAGAAACTGCTAGTTCTTCATCTGAACCAGAAAATAATGATGAACTAGAACAGATCACAATAGCACGGGCCTTACTGAACTATCGTCTGAAGGAAAAGATAGCTATGTCAAATCGTAATTCTCCAATTCCATTTCAAAGGAAGTTTCAGATTCAAAATCCCAGGCCAAGCAATGGGCAACCTACACCTGCTACTACATCAAAGATTCTTCCTTTAATTTGCCGGAAGACAGCACACCGAAGTAGGCACTTGACAATGGCAAATGAAAGTCCTCTAAGCAGGCCTCCACTTGCAGCAGCAGCCAATGATAATTCCATGTCACCTCCACAGTCTTCTGCACCAGAAAACCGAGGGACCCGTCCATTGAAATTCCCTGCTGCAGGTGCAGCACCTTATGTCCCTATTCGACAAATGAGGTCGCCTTGCCGGGGTATTGCACCTCCGGTGACTTTAAGGACTGTAGTACCTGTATTCTCTGCACCACCGGGTGCTGTACACCATCAAGTGGTACAGCCCCCTCCCGTACGAGTTGCCCCTCCTGTCAACATTAGGCAGGCCGTTCCAGTATATGCTGCTCCACCAGTTCGAAAAGATGAACCTGCTGCCATCCAAAAGAAAGATCCACCAACTGTTACTGTCCCTAGCCAGCAAGATAAAACGCCAGTTAAAATTCCGGAGACAGACAGAGAGTCAGAGACTGAGAACACCCCACCAGAATCTCAGGCAGTGCAGAGCTTGGAGATGCTGACGATCTGA 1896 0.481 MVEFKEARNSYKRSPGWGKIVPKLDGDGLSSLSSSGYTSERGSNTITSGSTMDKHVQNEIQEIRIDNVVDGISDSQTSWLPANWHGDEANTYLMLLTTSSDAFYHLKDCRICIEMVLLKSIVLSEVQRSLLDGGMHVEDLPVDPLPRPGSSPHLGQPKLSTDFLKDRSNLILELVVLHDKEKKFGPLLSRADPNQLIRSGSGYHFPERATFLRERKCGVHGAEMYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYITFRSGLGHLPVFTGTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETASSSSEPENNDELEQITIARALLNYRLKEKIAMSNRNSPIPFQRKFQIQNPRPSNGQPTPATTSKILPLICRKTAHRSRHLTMANESPLSRPPLAAAANDNSMSPPQSSAPENRGTRPLKFPAAGAAPYVPIRQMRSPCRGIAPPVTLRTVVPVFSAPPGAVHHQVVQPPPVRVAPPVNIRQAVPVYAAPPVRKDEPAAIQKKDPPTVTVPSQQDKTPVKIPETDRESETENTPPESQAVQSLEMLTI 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1077 631 CDD DSRM_AtDRB-like_rpt2 309 377 IPR044451 GO:0003725
Dere08g1077 631 FunFam Double-stranded RNA-binding protein 2 307 378 - -
Dere08g1077 631 PANTHER - 224 574 - -
Dere08g1077 631 MobiDBLite consensus disorder prediction 466 504 - -
Dere08g1077 631 MobiDBLite consensus disorder prediction 483 497 - -
Dere08g1077 631 FunFam Double-stranded RNA-binding protein 2 222 293 - -
Dere08g1077 631 Pfam Double-stranded RNA binding motif 311 376 IPR014720 -
Dere08g1077 631 Pfam Double-stranded RNA binding motif 225 291 IPR014720 -
Dere08g1077 631 SUPERFAMILY dsRNA-binding domain-like 311 383 - -
Dere08g1077 631 Gene3D - 307 378 - -
Dere08g1077 631 MobiDBLite consensus disorder prediction 32 52 - -
Dere08g1077 631 SUPERFAMILY dsRNA-binding domain-like 225 291 - -
Dere08g1077 631 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 224 293 IPR014720 -
Dere08g1077 631 MobiDBLite consensus disorder prediction 616 631 - -
Dere08g1077 631 CDD DSRM_AtDRB-like_rpt1 224 292 IPR044450 GO:0003725
Dere08g1077 631 SMART DRBM_3 311 377 IPR014720 -
Dere08g1077 631 SMART DRBM_3 225 292 IPR014720 -
Dere08g1077 631 Gene3D - 225 306 - -
Dere08g1077 631 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 310 378 IPR014720 -
Dere08g1077 631 MobiDBLite consensus disorder prediction 579 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1077 Dere-ChrDere08 14762980 14775567 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1077 08 14762980 14775567 Dere07g0827 07 11775428 11781909 CCT
Dere08g1077 08 14762980 14775567 Dere08g1077 08 14762980 14775567 ECH