Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0948 ATGGAGTTGGAAAGCATACTTCACTTCCTTCAGGACAAGACCATTTTAATCACCGGTGCCACTGGGTTTCTCGCCAAAATTTTTGTGGAGAAGGTACTGAGGGTTCAGCCAAATGTGAAGAAACTCTACCTTCTTTTAAGAGCCGCAGATACCGTATCTGCCTCTCAACGCTTGCACAATGAGATCATAGGGAAGGATTTGTTCAAATTGTTAAAGGAAAATCAGGGTTCAGAATTCAATTCCTTTATCTCAAAGAAGTTGACTCTGGTTCCTGGGGACATTTCTCAAGAGGACTTGGGTTTGAAGGACTCCGTTCTAATGGAAGAGATTTGCAAACAAACAGATGCTATAGTTAACTTAGCTGCAACAACCAACTTCGATGAAAGATACGACGTCGCATTGGGAATAAATACCTTGGGAGCTAAGCATGTCTTGAGCTTCGCCAAAAAATGTATTAAACTGAAGGTCCTCGTCCACGTATCAACAGCTTACGTGTGTGGGGAGAAAGGAGGACTCATAGCAGAGGATCCATACCAAATGGGTGTGTCACTAAACGGAGTGCCTGGACTAGACATTGATACAGAAAAGAAATTAGTAGAGGAAACTCTGAATCAGCTTCAAGAGCAGGGAGCCACAGAATATGAAATTAAAATTGCCCTGAAGGACTTAGGTCATAGCAGGGCAAACGTATATGGATGGCCAAACACTTACGTGTTTACAAAGGCAATGGGAGAAATGCTTGTAGGAACGTTGAAGGGAAATCTGCCCGTTGTCATTGTACGTCCTACCATCGTCACCAGCACTTACAAAGAACCTTTCCCTGGATGGGTTGAAGGTGTAAGAACCATAGACAGTTTAATTGTTGCTTATGGTAAAGGAAAGTTAAAATGCTTCCTTGCGGATATCAAGGCAGTTTTTGACGTGATACCAGCTGACATGGTGGTGAATACAATACTAGTAGTGATGGTGGCTCATGCGAATCAGCCAGATGATGTAATATATCACGTGGGTTCGTCAGTGAGAAATCCCATAAGATATTTTAATCTTAGAGACTACAGCGAAAAATACTTCACGTCAAAGCCATTAAGAAACAAGGATGGAAGTGTTGTCAAGGTTGGCAAAGTTACCATATTGAACAGCATGGATAGTTTCCGCAGATACATGTTCATTCGCTATATGCTCCTCTTGAAGGGACTCGAGCTGGCCAATACAGCTTTTTGCCAATATTTTCGGGGAGTGTATCTTGATTTGAACAGAAAGATTCAAATTGTGATGCGCTTGGTTGATCTTTACAGGCCTTACTTGTTCTTCACTGGCATATTTGATAATATGAACACACAGAAGTTGCGAATTGCGGCAAGACAAAGTGGGGTGGAGATGGATATGTTTTATTTTGACCCGAAGATGATTGATTGGGAGGATTATTTCCTCAATATCCATATCCCTGGCATCGTTAAGTATGTCCTCAAGTGA 1473 0.4189 MELESILHFLQDKTILITGATGFLAKIFVEKVLRVQPNVKKLYLLLRAADTVSASQRLHNEIIGKDLFKLLKENQGSEFNSFISKKLTLVPGDISQEDLGLKDSVLMEEICKQTDAIVNLAATTNFDERYDVALGINTLGAKHVLSFAKKCIKLKVLVHVSTAYVCGEKGGLIAEDPYQMGVSLNGVPGLDIDTEKKLVEETLNQLQEQGATEYEIKIALKDLGHSRANVYGWPNTYVFTKAMGEMLVGTLKGNLPVVIVRPTIVTSTYKEPFPGWVEGVRTIDSLIVAYGKGKLKCFLADIKAVFDVIPADMVVNTILVVMVAHANQPDDVIYHVGSSVRNPIRYFNLRDYSEKYFTSKPLRNKDGSVVKVGKVTILNSMDSFRRYMFIRYMLLLKGLELANTAFCQYFRGVYLDLNRKIQIVMRLVDLYRPYLFFTGIFDNMNTQKLRIAARQSGVEMDMFYFDPKMIDWEDYFLNIHIPGIVKYVLK 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0948 490 PANTHER MALE STERILITY PROTEIN 2-RELATED 6 490 IPR026055 GO:0080019
Dere08g0948 490 CDD FAR_C 390 489 IPR033640 -
Dere08g0948 490 Pfam Male sterility protein 392 490 IPR033640 -
Dere08g0948 490 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 337 IPR036291 -
Dere08g0948 490 CDD FAR-N_SDR_e 13 361 - -
Dere08g0948 490 Gene3D - 8 383 - -
Dere08g0948 490 Pfam Male sterility protein 17 318 IPR013120 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0948 Dere-ChrDere08 13369397 13372596 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0948 113 489 Acyl Lipid Metabolism Gene Families AT4G33790 63.660 0.0 511
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0948 08 13369397 13372596 Dere07g0678 07 9955862 9966448 CCT
Dere08g0948 08 13369397 13372596 Dere08g0948 08 13369397 13372596 ECH