Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0867 ATGCATTGTCGCATGTATGGCGCCACCAAGCGCCGCATCTTCTGCGCCTTCCTTCTGCTTCTTCTTTCCGGTTTTGCCGTTGCATTGTCGGAAATGCCAAATCCCAGGTTGTCCGTCTCTTCTTCGGGTCAGATAAACTCGAACTCGGTTCTGGTGGCTCTTCTTGATTCGCATTACACGGAGCTCGCCGAGCTGGTGGAGAAGGCTATGCTCTTGCAGACCCTAGAAGACACTGTCGGCAGCCACAACATCACCATCTTCGCCCCCAGAAACGAAGCTCTCGAACGCGATCTCGACCCGGAGTTCAAGCGCTTCCTTCTCGAACCAGGTAATCTCAAGTCTCTTCAGACCTTGCTCATGTTCCACGTCATTCCTACCCGAATCGGATCGGAGCAGCTGCCGACTCAGACCGGGTCGACCCATCATGAGACGCTTTCCAGTGACTATCTCCATGTCCATAACAATGGGACTACAGAATGGACAGTGGATCGCGCCAAGATTATCCACCCAGACGCGGTGACCCGACCCGATGGCGTAATCCACGGGATTGAGTGCCTCTTGGTACCTCGTTCCGTACAAGACGACTTCAACCGCCGGCGAAGCCTCCAGTCCATCACGGCGGTGAAGCCGGAGGGAGCACCGGAAGTGGACCCGAGGACTCATCGGCTTAAGAAACCCGCTCCCCCGGCGAAACCCGGTTCGCCCCCAGCTTTACCAATCTACGATGCAATGGCACCTGGACCCGCACTTGCTCCAGCTCCTGCGCCGGGACCAGGCGGGGCCCACCACCATTTCAACGGTGAAGCCCAAGTGAAGGATTTCATTCAGACGCTGCTCCATTACGGTGGTTACAATGAAATGGCAGATATATTGGTGAATCTAACTTCCTTAGCCTCCGAAATGGGTCGGCTAGTCTCCGAAGGGTACGTGCTCACCGTTTTGGCTCCCAATGATGAAGCCATGGCTAAATTGACTACGGACCAACTGAGTGAACCAGGCGCACCCGAACAGATAATGTATTACCATCTCATACCCGAGTATCAAACCGAAGAGAGTATGTACAATGCGGTTCGAAGGTTCGGTAAGGTCCGGTACGATACCCTGCGGTTTCCGCATAAGGTGGTGGCTCAGGAGGCTGATGGATCAGTGAAATTCGGGCAGGGAGACGGGTCTGCGTATTTATTCGACCCGGATATATACACAGATGGCCGGATCTCGGTTCAGGGCATCGATGGGGTACTGTTCCCGTCGGAGCAGGAGGAGGCGAAGCCCATTACCAGAACGGTTCAACCTGCTAAGGTCGTGGTCAAGCAAAGAAGAGGAAAATTGCTGGAGGCAGCGTGCTGGGTTCTTGGAACCTTTGGACAAGATGGTAGATTCACCCCTTGCCATTGA 1395 0.5455 MHCRMYGATKRRIFCAFLLLLLSGFAVALSEMPNPRLSVSSSGQINSNSVLVALLDSHYTELAELVEKAMLLQTLEDTVGSHNITIFAPRNEALERDLDPEFKRFLLEPGNLKSLQTLLMFHVIPTRIGSEQLPTQTGSTHHETLSSDYLHVHNNGTTEWTVDRAKIIHPDAVTRPDGVIHGIECLLVPRSVQDDFNRRRSLQSITAVKPEGAPEVDPRTHRLKKPAPPAKPGSPPALPIYDAMAPGPALAPAPAPGPGGAHHHFNGEAQVKDFIQTLLHYGGYNEMADILVNLTSLASEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHLIPEYQTEESMYNAVRRFGKVRYDTLRFPHKVVAQEADGSVKFGQGDGSAYLFDPDIYTDGRISVQGIDGVLFPSEQEEAKPITRTVQPAKVVVKQRRGKLLEAACWVLGTFGQDGRFTPCH 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0867 464 ProSiteProfiles FAS1/BIgH3 domain profile. 271 399 IPR000782 -
Dere08g0867 464 MobiDBLite consensus disorder prediction 207 262 - -
Dere08g0867 464 FunFam Fasciclin-like arabinogalactan protein 16 266 417 - -
Dere08g0867 464 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 14 456 IPR044654 -
Dere08g0867 464 SUPERFAMILY FAS1 domain 250 417 IPR036378 -
Dere08g0867 464 SUPERFAMILY FAS1 domain 48 190 IPR036378 -
Dere08g0867 464 MobiDBLite consensus disorder prediction 228 242 - -
Dere08g0867 464 Gene3D FAS1 domain 50 189 IPR036378 -
Dere08g0867 464 ProSiteProfiles FAS1/BIgH3 domain profile. 46 187 IPR000782 -
Dere08g0867 464 Pfam Fasciclin domain 58 189 IPR000782 -
Dere08g0867 464 Pfam Fasciclin domain 296 416 IPR000782 -
Dere08g0867 464 Gene3D FAS1 domain 290 417 IPR036378 -
Dere08g0867 464 SMART fasc_3 85 190 IPR000782 -
Dere08g0867 464 SMART fasc_3 312 417 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0867 Dere-ChrDere08 12473601 12476258 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0867 08 12473601 12476258 Dere07g0569 07 8742015 8744770 CCT