Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0568 ATGCAACTGCAAATTTCTCCTAGTTTAAGGCATGTCACTGTGCTTCCAGGGAAAGGGTTGAAAGAGTTCATCAAAGTGAATGTTGCATCAAGGCGAGTTTCGTATAGGAAGCTCTTTTATTCACTCTTGTTCTTCACGTTTCTTGTTCGGTTTGCGTTTGTGTTGACAGCAGTGGATACGATTGATGGTGAAAACAGGTGCTCTACAATAGGTTGCCTGGGGAAAAAACTAGGACCAAGGATTCTGGGAAGAAAGCTAGAATCAACTGTCCCAGAAGTGATATTCCAAGTATTAGACGAACCCGTAAGCAAAGATGAATTACAGGGAAGATCTGATATTCCACAGACCTTAGAAGAATTCATGACTGAAGTGAAGGAGGGTGGATATGATGTCAAGACATTTGCTGTTAAACTTCGAGAAATGGTCACCCTCATGGAACAGAGAACCAGGACAGCTAAAATCCAAGAATACTTGTATCGTCATGTAGCATCAAGCAGCATACCAAAACAGCTTCACTGCCTTGCCTTGAGGCTGGCCAATGAGCACACCAACAATGCAGAAGCTCGCCTTCAGCTCCCTTCTGCAGAGCTCGTCCCAGCCCTGGTTGACAACAACTACTTCCACTTCGTCCTCGCCTCGGACAATGTTCTGGCTGCCTCTGTGGTTGCAAAATCCCTTGTCTGCAACTCCTTGCGGCCCCAGACAGTTGTTCTTCACATCATTACAGATAGAAAGACTTATTATCCCATGCAGGCTTGGTTCTCATTGCACCCCCTATCACCTGCTATTATTGAGGTCAAGGCATTGCACCATTTTGACTGGTTTACAAAGGGAAAGGTGCCTGTTCTGGAAGCAATGGAGAAAGACCAGAAAGTGAGGTCACAATTTAGAGGGGGATCATCAGCTATTGTTGCAAATGCTACTGAGAAGCCTAATGTGATTGCATCAAAGCTGCAAGCACTTAGTCCCAAGTATAATTCAGTGATGAACCACATACGTATACATCTGCCGGAGTTATTCCCAAGTCTAAACAAGGTGGTCTTCCTGGATGATGACCTTGTGGTGCAAACTGATCTTTCACCCCTGTGGGACATTAACATGAATGGAAAAGTCAATGGAGCAGTAGAAACATGTGGTGGAGAAGATAAGTTTGTAATGTCAAAGAGGCTAAAAAACTATTTGAACTTCTCCCACCATCTAATATCCAAGAATTTCGACCCCGATGAATGTGCTTGGGCTTATGGCATGAACATTTTTGATCTGGAGGCTTGGAGGAAGACCAATATAAGCCTTACATACCATTATTGGGTTGAGCAGAATATAAAATCAGACCTAAGTTTGTGGCAGCTAGGGACATTACCTCCTGGATTAATAGCATTCCATGGTCATGTCCACATCATTGATCCTTTCTGGCACATGCTGGGATTGGGATATCAGGAGAATACAAGTCTTGCTGATGCTGAGCGCGCTGGCGTCATCCATTTTAATGGGAGGGCAAAGCCTTGGCTGGAGATAAATTTTCCACAACTAAGGCCACTATGGGCTAAGTATGTCGAGTTTTCAGATAAGTTCATAAAGAGCTGTCACATTAGGGCATCATAG 1602 0.4407 MQLQISPSLRHVTVLPGKGLKEFIKVNVASRRVSYRKLFYSLLFFTFLVRFAFVLTAVDTIDGENRCSTIGCLGKKLGPRILGRKLESTVPEVIFQVLDEPVSKDELQGRSDIPQTLEEFMTEVKEGGYDVKTFAVKLREMVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHTNNAEARLQLPSAELVPALVDNNYFHFVLASDNVLAASVVAKSLVCNSLRPQTVVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALHHFDWFTKGKVPVLEAMEKDQKVRSQFRGGSSAIVANATEKPNVIASKLQALSPKYNSVMNHIRIHLPELFPSLNKVVFLDDDLVVQTDLSPLWDINMNGKVNGAVETCGGEDKFVMSKRLKNYLNFSHHLISKNFDPDECAWAYGMNIFDLEAWRKTNISLTYHYWVEQNIKSDLSLWQLGTLPPGLIAFHGHVHIIDPFWHMLGLGYQENTSLADAERAGVIHFNGRAKPWLEINFPQLRPLWAKYVEFSDKFIKSCHIRAS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0568 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 208 525 IPR029044 -
Dere08g0568 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 208 530 IPR029044 -
Dere08g0568 533 CDD GT8_like_1 207 518 - -
Dere08g0568 533 Pfam Glycosyl transferase family 8 203 505 IPR002495 GO:0016757
Dere08g0568 533 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 86 530 IPR029993 GO:0047262
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0568 Dere-ChrDere08 8698675 8702330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0568 1 533 Glycosyltransferase AT5G54690 79.065 0.0 872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0568 08 8698675 8702330 Dere07g0175 07 3788202 3791731 CCT
Dere08g0568 08 8698675 8702330 Dere08g0568 08 8698675 8702330 ECH