Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0952 ATGCAAAATCATGTCGATGCGTGTAAGCCTAATTTGTTTGAATCGCGGCAATTGTCTTACGTGGCAAATTTTGATTCGATATGGAAGCATCCTTATGAGAACGAGAGCTTTCTCTCTCCCCTTTTCCTTCGTGTCTCTCTCTGTCTGCGTTTATTGATGGCGTCCCAAGCTAGTCTTCTCCTTCAAAAGCAGCTCAAAGATCTTTGCAAAAACCCCGTCGACGGGTTCTCCGCCGGTTTAGTAGATGAAAGTAACATATTTGAATGGAGTGTCACGATAATTGGACCTCCCGATACCCTCTATGAGGGGGGATTCTTCAACGCCATAATGAGTTTTCCATCCAATTACCCGAACAGCCCGCCATCAGTGAAATTCACTTCAGAGATATGGCATCCAAATGTATATCCTGATGGGCGAGTTTGCATATCAATTCTTCATCCTCCTGGTGAGGATCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATACAGTAGAGAGTATAGTATTGAGTATCATATCTATGCTTTCTAGTCCAAATGATGAATCTCCGGCAAATGTTGAAGCTGCTAAGGAGTGGAGAGACAGGAGAGACGATTTCAAGAAGAAGGTTAGCCGCTGCGTAAGGAAGTCACAAGAAATGTTGTGA 657 0.4414 MQNHVDACKPNLFESRQLSYVANFDSIWKHPYENESFLSPLFLRVSLCLRLLMASQASLLLQKQLKDLCKNPVDGFSAGLVDESNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPSVKFTSEIWHPNVYPDGRVCISILHPPGEDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRKSQEML 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0952 218 CDD UBCc 69 211 IPR000608 -
Dere07g0952 218 SUPERFAMILY UBC-like 55 214 IPR016135 -
Dere07g0952 218 Gene3D Ubiquitin Conjugating Enzyme 53 218 IPR016135 -
Dere07g0952 218 FunFam ubiquitin-conjugating enzyme E2 7 54 218 - -
Dere07g0952 218 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 55 215 - -
Dere07g0952 218 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 56 216 IPR000608 -
Dere07g0952 218 SMART ubc_7 59 216 - -
Dere07g0952 218 Pfam Ubiquitin-conjugating enzyme 61 210 IPR000608 -
Dere07g0952 218 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 130 145 IPR023313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0952 Dere-ChrDere07 13078073 13082573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0952 63 183 Miscellaneous Gene Families AT3G17000 33.077 3.38e-13 65.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1187 08 16048772 16052966 Dere07g0952 07 13078073 13082573 CCT