Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere07g0735 | ATGGCTATTGTTGGTCTGCACAATGTGTCAGTGCTTGACTCTTCTTTCCTTAGGGATTCCCACTCTCGATCATCCAGTAGGCGAGGAGATGGAGGGAGGGGAAGCACCCGGTCATCTTCACTTTTGCAAATGTGGCAAGAGATTGAGGATGAGCATGTGGTGAGTCAAGCTCAAGGAAGACCTAGTGAATTATTGCTTCAACAAAGGACTGATGAGTTGATTGGTGACCTCTCGCAGGCAAACATGCCAGATAGTTATGAGAGAGGACAGAGGCATATTTTAGAAGATACAGTTGTGGATGAGAACGAAACATGGTTGCCGTCGCAAAGTCAAAATGGATCTCATGATAAGCAGGAGGAGTTAAACAATTATAGTTGTGAAAACTCTTCTGATCTTGGAGATCTTGAAAGGGAAAGAGTAAGGAAAATTTTCAGGGAATGGATGAGCAGTGGCGCTAAGGATCATGTATCAAGCATTTCACTAAGAAATAACAGTTCTAGGGCCGAATGGCTTGGTGAAACGGAGCAGGAGAGGGTGAGAATTATAAGGGAGTGGGTGCAAATGAGTAGCCAGCAGAGAGGTGTTTCTTCTGGGGACAATAGAGAAGAACAATCTGCTGAAATTGGTACCCAAATTGAACGCGTTCGTGATGGATTTGTTGTTAATAAGAATGAGGGCCAAGTCGAGCATACTCGTAGGGGGATTCGTAAATTATGTGGCAGACAGGTTCTGCTTGATATGCTTAAGAAGGCTGAGAGGGAAAGGCAGAGAGAAGTTCAGGAGTTGTTAGACCATCGGGCTGTATCTCATTTTCCCCATCGCAATCGCATTCAGGCGTTGCTTAGAGGCAGGTTTTTGAGACATGATAGAGCTGCTGATAAGAACAGGACTACTTCTGTTGCGGAGAGTGAATTAGGCTTATTGAGGCAAAAGCAGACTGTATCAGGTTTAAGGGAAGGATTCTTCTCTAGAAAGAACATCCCTGGTTGCAGTTCAGAAAACTGCAATTTAACTGATACCTCATCAAACAGTGATATTGATGCTGACACAAATGAACAAACTGAAGCCAGCAGTTCACAAGATTCCCCAAATGTGCATTCCAAATTGTATGAGCCTAATTATAGAGGAAGTAATGGAAATGGGATATCAAGTGGTCAAAATTATTTGCAGGAACCTGCACTAAAGAAATTAGATTGGCAAGACTCTTCTGCTCATGTTGAAGGAGGACGGCTACAGCATTTGAAACTTGAATCAAGAGATTTACAGTCATCACCCAGTGTTGGGATCGAAAGAAGAGACGGCACAGGACGAAGTGTTGATGTGATGTCAACCGAAGATACTTCTAAGGAACTTACCCAACCGGGTTTGCAAGTTGATGATACAGAGCATTGCTCTTCGCCAGAATTTAGTGAGGACCATAACGAACAGTCTGAGATTGGTGTTCTAACCATAGTTAATGTTGAAAATCGTTTATCAGATCATGGCAATTATATAGAGGGAAATATCGTTGATGACGAGGGCTTGAATGAATCTGCTGCCCCGGAAGAAGAGCAGCCAATAGATTTTGAAAATGACGGAAGTGATTCGCTTCCAATGAACGTTGAATGGAGAAATAGCCTTGAGGAAAGTATGGATATTAATCGTCCAACTTCTACGGCAAATGAGTTGCCCCAACTCATATTGGAGGATGAAGATGGGGCAGAATCTCATCTGCAAGAAGTACATGAATTGTGGCAAGAAGATGGTGGCTTTCAGGACCCTGTAGAAAATTATTTGGGAGAACCTTTTGATCGTCAAGGTGCTCTAGCAGATAGAACTCCTGGAATTTATTTTCCCGAGGATGACAATGTGTACCGTGGTGAACTCGGGGAACTGTTAATTAGGCGTCGTGTTTCCAATCTCCTTAACAGCAGCTTCCGCGAGAATCTTGATCAGTTGATACAATCATATGTTGAAAGGCAAAATCATGCTCAGATTGAGTGGGAACTGCAGGAGATAACCCCTTCTTCTGACTCGGTGGAAGAGGAACTGGAGCAGCATGCTAGGGATCAGATTGGTCAGGAGGGTGCTATTGACAGTCCGATTTACCTGCCCTCATCACCAACACCTCCTTCTCAGCCTCTATGGGACCATCAATTACATCACGACAACTGGCCACAGAATGACATGAATATTCAGCATACTGGAATTGAGTGGGAGATCATTAATGGCTTGAGGATTGACATAGCTGTGCTAGAAGAGAGGATGAATAATATGCAGAGGATGCTGGAGGCCTGTATGGATATGCAGCTTGAGTTGCAGCGCTCAATAAGACAAGAAGTTTCTGCCGCCCTTAATTGCTCAGATGGTTCATCAGGATTGCAAGACCATGATTCACCAGATGATAAGTCTAAATGGGAGTGTGTAAGAAACGGACTTTGCTGTATATGCAGTGAGAGCAATATTGATTCTTTATTGTACAGATGTGGGCACATGTGTACATGCTTAAAATGTGCGAACGAGTTGTTCCAGAGCAAAAGAAGGTGCCCGATGTGTCAAGCACCTGTGGTGGAGGTGATACAAGCTTATTCTATACTGTAA | 2580 | 0.436 | MAIVGLHNVSVLDSSFLRDSHSRSSSRRGDGGRGSTRSSSLLQMWQEIEDEHVVSQAQGRPSELLLQQRTDELIGDLSQANMPDSYERGQRHILEDTVVDENETWLPSQSQNGSHDKQEELNNYSCENSSDLGDLERERVRKIFREWMSSGAKDHVSSISLRNNSSRAEWLGETEQERVRIIREWVQMSSQQRGVSSGDNREEQSAEIGTQIERVRDGFVVNKNEGQVEHTRRGIRKLCGRQVLLDMLKKAERERQREVQELLDHRAVSHFPHRNRIQALLRGRFLRHDRAADKNRTTSVAESELGLLRQKQTVSGLREGFFSRKNIPGCSSENCNLTDTSSNSDIDADTNEQTEASSSQDSPNVHSKLYEPNYRGSNGNGISSGQNYLQEPALKKLDWQDSSAHVEGGRLQHLKLESRDLQSSPSVGIERRDGTGRSVDVMSTEDTSKELTQPGLQVDDTEHCSSPEFSEDHNEQSEIGVLTIVNVENRLSDHGNYIEGNIVDDEGLNESAAPEEEQPIDFENDGSDSLPMNVEWRNSLEESMDINRPTSTANELPQLILEDEDGAESHLQEVHELWQEDGGFQDPVENYLGEPFDRQGALADRTPGIYFPEDDNVYRGELGELLIRRRVSNLLNSSFRENLDQLIQSYVERQNHAQIEWELQEITPSSDSVEEELEQHARDQIGQEGAIDSPIYLPSSPTPPSQPLWDHQLHHDNWPQNDMNIQHTGIEWEIINGLRIDIAVLEERMNNMQRMLEACMDMQLELQRSIRQEVSAALNCSDGSSGLQDHDSPDDKSKWECVRNGLCCICSESNIDSLLYRCGHMCTCLKCANELFQSKRRCPMCQAPVVEVIQAYSIL | 859 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere07g0735 | 859 | CDD | mRING-HC-C3HC5_NEU1 | 804 | 856 | - | - | |
| Dere07g0735 | 859 | MobiDBLite | consensus disorder prediction | 332 | 386 | - | - | |
| Dere07g0735 | 859 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 785 | 857 | IPR013083 | - | |
| Dere07g0735 | 859 | Coils | Coil | 241 | 268 | - | - | |
| Dere07g0735 | 859 | SUPERFAMILY | RING/U-box | 806 | 852 | - | - | |
| Dere07g0735 | 859 | Pfam | Zinc finger, C3HC4 type (RING finger) | 804 | 851 | - | - | |
| Dere07g0735 | 859 | Coils | Coil | 735 | 762 | - | - | |
| Dere07g0735 | 859 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 859 | - | - | |
| Dere07g0735 | 859 | ProSiteProfiles | Zinc finger RING-type profile. | 807 | 846 | IPR001841 | - | |
| Dere07g0735 | 859 | MobiDBLite | consensus disorder prediction | 421 | 452 | - | - | |
| Dere07g0735 | 859 | MobiDBLite | consensus disorder prediction | 105 | 130 | - | - | |
| Dere07g0735 | 859 | MobiDBLite | consensus disorder prediction | 457 | 476 | - | - | |
| Dere07g0735 | 859 | MobiDBLite | consensus disorder prediction | 17 | 39 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere07g0735 | Dere-ChrDere07 | 10745734 | 10750081 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Dere08g1005 | 08 | 14021602 | 14025538 | Dere07g0735 | 07 | 10745734 | 10750081 | CCT | |
| Dere07g0735 | 07 | 10745734 | 10750081 | Dere07g0735 | 07 | 10745734 | 10750081 | ECH |