Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0438 ATGGCCGCTGTTACTTCTTTGTCTTTCTCGGCATTGACTCAGTATTCTGAAAGAAAGCAGCTAACTGTCCCTTCCGCTCGCTTCCTCGGATTCAATTCCGAGGTCTTAAGGTTTCGGACGAATATTCCGTATCACTGTGTAGGTGTTGGAGCTTCCAATTTGGCCTCTAAAGTGGTTATTCAATGCATGTCTTCTGCGACAGATGTTCCCACTGTTTCTGAGACAAAATTAAATTTCCTCAAGGCATATAAACGACCAATCCCTAGTATCTACAACAACGTGCTGCAGGAGCTCATTGTCCAGCAGCATTTAATGAGATACAAGAGATCATATTGTTATGATCCTGTATTTGCACTTGGTTTTGTCACCGTGTATGATCAACTCATGGATGGGTATCCTAGTGATGAAGATCGAGATGCCATCTTCCAGGCATATATTAGGGCATTGAAGGAAGAGCCGGACCAATACAGAGTAGATGCTCAGAAGTTGGAAGAGTGGGCTCGGGCTCAGAATCCAACTTCCCTGGTTGAGTTTTCTTCCAGAGAAGGAGAGGTTGAGGGGATATTAAAGGATATTGCCGAAAGAGCCGGGGGAAAGGGGGATTTCAGTTATAGTCGTTTCTTTGCAGTAGGCCTCTTTCGACTTCTTGAGTTGGCAAATGCAACAGAACCTACAATTTTAGAAAAGCTTTGTGCAGCTTTAAACATCAACAAAAGAAGCGTTGATCGGGATTTGGATGTGTACCGTAATCTGCTTTCCAAGCTGGTTCAGGCAAAAGAGCTGCTTAGGGAATATGTTGACAGGGAGAAGAAGAAAAGAGAAGAAAGGACTGAATCTCAAAAGGCGAATGAGGCCATTTCAAAATGTTTGGGACAAAATATCAATTTTCTGGCGTGTAGACATTATGGTAGTTCTAATGGAACGATCTCCCAGTGA 936 0.4327 MAAVTSLSFSALTQYSERKQLTVPSARFLGFNSEVLRFRTNIPYHCVGVGASNLASKVVIQCMSSATDVPTVSETKLNFLKAYKRPIPSIYNNVLQELIVQQHLMRYKRSYCYDPVFALGFVTVYDQLMDGYPSDEDRDAIFQAYIRALKEEPDQYRVDAQKLEEWARAQNPTSLVEFSSREGEVEGILKDIAERAGGKGDFSYSRFFAVGLFRLLELANATEPTILEKLCAALNINKRSVDRDLDVYRNLLSKLVQAKELLREYVDREKKKREERTESQKANEAISKCLGQNINFLACRHYGSSNGTISQ 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0438 311 Hamap Protein Thf1 [thf1]. 66 274 IPR017499 GO:0010207|GO:0015979
Dere07g0438 311 Pfam Thylakoid formation protein 71 276 IPR017499 GO:0010207|GO:0015979
Dere07g0438 311 Coils Coil 248 278 - -
Dere07g0438 311 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 294 IPR017499 GO:0010207|GO:0015979
Dere07g0438 311 NCBIfam photosystem II biogenesis protein Psp29 68 273 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0438 Dere-ChrDere07 7158721 7162360 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0760 08 11362957 11366328 Dere07g0438 07 7158721 7162360 CCT
Dere07g0438 07 7158721 7162360 Dere07g0438 07 7158721 7162360 ECH