Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere04g1138 | ATGGTCGGCAAGGAGAACTTGAGGACCGAGGATTTGAACTTGTGCTTTGAGAAGCTTATGATGGTAGCAGGCGGTGGTGGTAACGGAAACAGTGGTAGAGGAGTGAAAGTGGAAGCTGGGGTGATCACCGAATGGAAGGATATTCCGGTGGAGCTTTTGATGCAAATTTTGTCCCTTGCGGATGATCAGACGGTTATTTCAGCTTCTGGAGTCTGTCGTGGATGGAGAGATGCTATTTGCTTTGCCCTTTCCCGTTTATCACTCTCATGGTGTGGTAAGAACTTGAATAATTTGGTCCTATCGCTTGCTCCTAAATTCACAAAATTACAAATTCTAATCCTTCGTCAAGACAAGCCTCAGCTAGAGGATAATGCTGTTGAGACTATCTCAAATTGCTGTCACGACCTGCAGATCCTGGACCTCAGCAAAAGTTTCAAGCTTACTGATCGGTCTCTGTATGCCTTAGCCCATGGATGTCCTGATCTTACAAAACTGAACATCAGTGGGTGTTCAGCATTTAGTGATGTTGCCCTGGCTTACCTAGCCAGTTTCTGTAGAAAATTAAAATGTTTAAATCTTTGTGGATGTGTTAGTGCTGCATCTGACTCTGCGTTACAGGCTATAGGACATTATTGTAATGAACTGCAGTCTTTGAACCTTGGATGGTGTGAAAATGTTGGTGATGTTGGAGTGATGAGTTTAGCAGCTGGTTGCCCTGATCTTAGAACACTTGACTTGTGTGGTTGTGTCCGTATAACAGATGATAGTGTGATTGCTTTGGCAAACGGGTGTCCTCATCTGAGGTCCCTTGGACTGTACTACTGCCAAAACATCACTGACAGAGCAATGTATTCGTTGGCACACAGCAAAGTGAATAACAGGATTTGGGAATCTGTGAAAGGCATTAATGAAGAGGATGGGCTAAGAACTCTCAACATTAGCCAATGTACTGCACTCACACCGTCTGCTGTTCAAGCCGTGTGTGACTCATTCCCAGCACTTCACACCTGCTCTGGCAGGCATTCACTCATCATGAGTGGCTGTTTGAACTTAACTTCCGTGCATTGTGCTTGTGCTGTGCATTCACATCGAGCAATCACCTCTTTTTCTTATCAAGCTCATTGA | 1125 | 0.4462 | MVGKENLRTEDLNLCFEKLMMVAGGGGNGNSGRGVKVEAGVITEWKDIPVELLMQILSLADDQTVISASGVCRGWRDAICFALSRLSLSWCGKNLNNLVLSLAPKFTKLQILILRQDKPQLEDNAVETISNCCHDLQILDLSKSFKLTDRSLYALAHGCPDLTKLNISGCSAFSDVALAYLASFCRKLKCLNLCGCVSAASDSALQAIGHYCNELQSLNLGWCENVGDVGVMSLAAGCPDLRTLDLCGCVRITDDSVIALANGCPHLRSLGLYYCQNITDRAMYSLAHSKVNNRIWESVKGINEEDGLRTLNISQCTALTPSAVQAVCDSFPALHTCSGRHSLIMSGCLNLTSVHCACAVHSHRAITSFSYQAH | 374 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere04g1138 | 374 | Gene3D | - | 44 | 79 | - | - | |
| Dere04g1138 | 374 | SUPERFAMILY | RNI-like | 77 | 289 | - | - | |
| Dere04g1138 | 374 | CDD | F-box_AtSKP2-like | 44 | 91 | - | - | |
| Dere04g1138 | 374 | PANTHER | UNCHARACTERIZED | 76 | 338 | - | - | |
| Dere04g1138 | 374 | Gene3D | Ribonuclease Inhibitor | 80 | 305 | IPR032675 | - | |
| Dere04g1138 | 374 | Pfam | Leucine Rich repeat | 212 | 235 | IPR001611 | GO:0005515 | |
| Dere04g1138 | 374 | Pfam | Leucine Rich repeat | 264 | 287 | IPR001611 | GO:0005515 | |
| Dere04g1138 | 374 | Pfam | Leucine Rich repeat | 238 | 261 | IPR001611 | GO:0005515 | |
| Dere04g1138 | 374 | SMART | LRR_CC_2 | 305 | 330 | IPR006553 | - | |
| Dere04g1138 | 374 | SMART | LRR_CC_2 | 185 | 211 | IPR006553 | - | |
| Dere04g1138 | 374 | SMART | LRR_CC_2 | 264 | 289 | IPR006553 | - | |
| Dere04g1138 | 374 | SMART | LRR_CC_2 | 106 | 132 | IPR006553 | - | |
| Dere04g1138 | 374 | SMART | LRR_CC_2 | 212 | 237 | IPR006553 | - | |
| Dere04g1138 | 374 | SMART | LRR_CC_2 | 133 | 158 | IPR006553 | - | |
| Dere04g1138 | 374 | SMART | LRR_CC_2 | 80 | 105 | IPR006553 | - | |
| Dere04g1138 | 374 | SMART | LRR_CC_2 | 159 | 184 | IPR006553 | - | |
| Dere04g1138 | 374 | SMART | LRR_CC_2 | 238 | 263 | IPR006553 | - | |
| Dere04g1138 | 374 | FunFam | F-box protein SKP2B | 80 | 298 | - | - | |
| Dere04g1138 | 374 | SUPERFAMILY | F-box domain | 39 | 80 | IPR036047 | GO:0005515 | |
| Dere04g1138 | 374 | Pfam | F-box-like | 46 | 80 | IPR001810 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere04g1138 | Dere-ChrDere04 | 12735246 | 12737703 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Dere05g2563 | 05 | 36185643 | 36187832 | Dere04g1138 | 04 | 12735246 | 12737703 | CCT | |
| Dere04g1138 | 04 | 12735246 | 12737703 | Dere04g1138 | 04 | 12735246 | 12737703 | ECH |