Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2545 ATGTCTCCCCTGTCCCCTACTGACTTGCAGAGGATTTTTGAGAAGCTGGACAAGAATGGCGATGGTTTTTTGAGCCTTGACAATCTGAATAATCTGCTCGAGAACACAGGCTTTCATCTTGGATTAGAGGAGGTTGAGTCTCTGGTGGGGAAGAAAAGGCTGGACTTGAATGAGTTCGTGATGTTCTACGAGTCCATTTCGAAGCAGAAGAACAGTAGTGAGGAAGAGATAGAGGAGGTAGAGAGGGACCTCGTGAAGGCGTTCGAGGTGTTCGATATGGACGGAGATGGGTTCATCAGCAGCCAAGAGCTGGAGTGTGTGCTCAAGAGGCTTGGCTTTTGGGACCACAAGAGTGCCAAAGATTGCACCACCATGATCTGCGTTCATGACACCAATTTGGATGGCCAGCTTGATCTTCAGGAATTTAGGAACATGATGTTGCATACCATCCTTTAA 456 0.4759 MSPLSPTDLQRIFEKLDKNGDGFLSLDNLNNLLENTGFHLGLEEVESLVGKKRLDLNEFVMFYESISKQKNSSEEEIEEVERDLVKAFEVFDMDGDGFISSQELECVLKRLGFWDHKSAKDCTTMICVHDTNLDGQLDLQEFRNMMLHTIL 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2545 151 Gene3D - 68 150 - -
Dere05g2545 151 Pfam EF-hand domain pair 83 146 IPR002048 GO:0005509
Dere05g2545 151 ProSitePatterns EF-hand calcium-binding domain. 92 104 IPR018247 -
Dere05g2545 151 Coils Coil 63 90 - -
Dere05g2545 151 Gene3D - 6 67 - -
Dere05g2545 151 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Dere05g2545 151 FunFam Calmodulin A 47 149 - -
Dere05g2545 151 Pfam EF hand 9 27 IPR002048 GO:0005509
Dere05g2545 151 CDD EFh 83 146 IPR002048 GO:0005509
Dere05g2545 151 ProSiteProfiles EF-hand calcium-binding domain profile. 79 114 IPR002048 GO:0005509
Dere05g2545 151 SUPERFAMILY EF-hand 8 147 IPR011992 -
Dere05g2545 151 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 53 146 - -
Dere05g2545 151 SMART efh_1 8 36 IPR002048 GO:0005509
Dere05g2545 151 SMART efh_1 83 111 IPR002048 GO:0005509
Dere05g2545 151 SMART efh_1 121 149 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2545 Dere-ChrDere05 35974210 35974665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2545 2 149 EF-hand Containing Proteins AT1G21550 44.737 2.62e-37 123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2545 05 35974210 35974665 Dere04g1087 04 11682200 11682682 CCT
Dere05g2545 05 35974210 35974665 Dere05g2545 05 35974210 35974665 ECH