Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1087 ATGTCTCCCCTAACACCCTCTGACTTGCAGCGAATTTTTGAGAAGCTGGACATGAATAACGATGGCTTCGTGAGCCTTGAAGAGCTAACCTGGCTGCTTGAGAAGACAGGCTTTCAGTTAAACCCCGAGGAGCTGGAATCGCTAGCGGGAAAACAGAGCCTCGACTTCAATGAGTTCTTGTTCTTTTACGAGTCCATATCGAAGCAGAACAATGGGGAGAACAGAGGAGGAGAAGACGATGAGATTGAGGACGTCGTGGATGTGGAGAGCGACCTTGCGAAGGCCTTCAAGGTGTTCGATTTGGACGGAGATGGCTTCATCACGAGCCAAGAGCTGGAGTGTGTGTTGAAGAGGCTCGGCTTGTGGAACGACACAAAAGGCAAGGATTGCACGAGCATGATTTGCGTATACGACACCAATTCAGATGGCCGTCTTGATTTCGAGGAGTTCAAGCACATGATGCTGCTTACCACTGCTTCTTAA 483 0.4948 MSPLTPSDLQRIFEKLDMNNDGFVSLEELTWLLEKTGFQLNPEELESLAGKQSLDFNEFLFFYESISKQNNGENRGGEDDEIEDVVDVESDLAKAFKVFDLDGDGFITSQELECVLKRLGLWNDTKGKDCTSMICVYDTNSDGRLDFEEFKHMMLLTTAS 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1087 160 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Dere04g1087 160 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Dere04g1087 160 Gene3D - 81 159 - -
Dere04g1087 160 SUPERFAMILY EF-hand 8 155 IPR011992 -
Dere04g1087 160 ProSitePatterns EF-hand calcium-binding domain. 138 150 IPR018247 -
Dere04g1087 160 ProSiteProfiles EF-hand calcium-binding domain profile. 87 122 IPR002048 GO:0005509
Dere04g1087 160 Gene3D - 6 69 - -
Dere04g1087 160 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 53 154 - -
Dere04g1087 160 SMART efh_1 129 157 IPR002048 GO:0005509
Dere04g1087 160 SMART efh_1 91 119 IPR002048 GO:0005509
Dere04g1087 160 SMART efh_1 8 36 IPR002048 GO:0005509
Dere04g1087 160 ProSiteProfiles EF-hand calcium-binding domain profile. 125 160 IPR002048 GO:0005509
Dere04g1087 160 FunFam Probable calcium-binding protein CML44 67 157 - -
Dere04g1087 160 Pfam EF-hand domain pair 90 154 IPR002048 GO:0005509
Dere04g1087 160 CDD EFh 91 154 IPR002048 GO:0005509
Dere04g1087 160 ProSitePatterns EF-hand calcium-binding domain. 100 112 IPR018247 -
Dere04g1087 160 Pfam EF hand 8 35 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1087 Dere-ChrDere04 11682200 11682682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1087 2 155 EF-hand Containing Proteins AT1G21550 47.097 6.33e-42 135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2545 05 35974210 35974665 Dere04g1087 04 11682200 11682682 CCT
Dere04g1087 04 11682200 11682682 Dere04g1087 04 11682200 11682682 ECH